NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28135.1 Public Mus musculus 16 Itgb5 23 108 98 CCDS HistoryNCBI Gene:16419Re-query CCDS DB by CCDS ID:28135.1Re-query CCDS DB by GeneID:16419See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28135.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069345.5 ENSMUSP00000069416.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069345.5Link to Ensembl Protein Viewer:ENSMUSP00000069416.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000069345Re-query CCDS DB by Protein ID:ENSMUSP00000069416
Original member NCBI NM_010580.2 NP_034710.2 Updated not alive Link to Nucleotide Sequence:NM_010580.2Link to Protein Sequence:NP_034710.2Re-query CCDS DB by Nucleotide ID:NM_010580Re-query CCDS DB by Protein ID:NP_034710
Current member NCBI NM_010580.3 NP_034710.2 Accepted alive Link to Nucleotide Sequence:NM_010580.3Link to Protein Sequence:NP_034710.2Re-query CCDS DB by Nucleotide ID:NM_010580Re-query CCDS DB by Protein ID:NP_034710Link to BLAST:NP_034710.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034710.2 816 O70309-2 816 99.8774% 0 1

Chromosomal Locations for CCDS 28135.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 33829961 33830030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33844986 33845071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33865448 33865652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33875802 33876051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33884953 33885121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33899241 33899402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33900510 33900605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33902794 33902883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33910465 33910599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33919785 33920214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33940490 33940712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33944104 33944204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33946491 33946610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33947715 33947852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33948657 33948832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2451 nt):
ATGCCGCGGGTGCCCGCGACCCTCTACGCCTGTCTGCTCGGGCTCTGCGCGCTCGTTCCGCGCCTCGCAG
GGCTCAACATATGCACTAGTGGAAGTGCCACCTCGTGTGAAGAATGCCTGTTGATCCACCCAAAATGTGC
CTGGTGCTCCAAAGAGTACTTTGGCAATCCACGGTCCATCACCTCTCGGTGTGACCTGAAGGCAAACCTC
ATCCGGAATGGCTGTGAAGGTGAGATTGAGAGTCCAGCCAGCAGCACCCACGTCCTCCGGAACCTACCTC
TCAGCAGCAAGGGTTCCAGTGCCACGGGCTCTGACGTCATCCAGATGACGCCGCAGGAGATTGCAGTGAG
CCTCCGGCCAGGCGAGCAGACTACGTTCCAGCTGCAGGTGCGCCAGGTGGAGGACTACCCTGTAGACCTG
TACTACCTGATGGACCTCTCCCTCTCCATGAAGGATGACTTGGAGAACATCCGGAGCCTGGGCACCAAGC
TTGCGGAGGAAATGAGGAAGCTCACTAGTAACTTCCGCTTAGGTTTCGGGTCTTTTGTTGACAAGGACAT
CTCTCCTTTCTCCTACACGGCACCGAGATACCAGACCAATCCGTGTATTGGTTACAAGTTATTCCCCAAC
TGCGTCCCCTCCTTCGGGTTCCGGCATCTGCTGCCTCTCACAGACAGAGTCGACAGCTTCAACGAGGAAG
TGAGGAAGCAGAGGGTGTCCCGGAACCGAGATGCCCCCGAGGGGGGGTTTGATGCGGTCCTCCAGGCTGC
TGTCTGCAAGGAGAAGATCGGATGGCGAAAAGATGCTCTGCACTTGCTGGTGTTCACAACAGACGATGTG
CCCCACATCGCACTGGATGGAAAACTGGGTGGCCTGGTCCAGCCCCACGATGGCCAGTGTCACCTGAATG
AAGCCAATGAGTACACAGCCTCTAACCAGATGGACTATCCATCGCTTGCCTTGCTTGGGGAGAAGCTGGC
AGAGAACAATATCAACCTCATTTTTGCTGTGACGAAGAACCACTATATGCTCTACAAGAATTTTACAGCC
CTGATACCTGGAACCACTGTGGAGATTTTGCATGGAGATTCCAAAAATATTATTCAACTGATTATCAATG
CGTACAGTAGCATCCGGGCTAAAGTGGAGCTGTCAGTGTGGGATCAGCCAGAAGACCTTAATCTCTTCTT
CACTGCCACCTGCCAAGATGGCATATCTTACCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGAC
ACGGCATCCTTTGAAGTGTCCGTGGAGGCTCGGAGCTGCCCCGGCAGACAAGCAGCACAGTCTTTCACCT
TGAGGCCCGTGGGCTTCCGGGACAGTCTGCAGGTGGAAGTCGCCTACAATTGCACATGCGGCTGTAGCAC
GGGGCTGGAGCCCAACAGTGCCAGATGCAGTGGGAATGGAACATACACCTGTGGGCTGTGCGAGTGTGAC
CCCGGCTACCTGGGCACTAGGTGCGAGTGCCAGGAGGGGGAGAACCAGAGCGGGTACCAGAACCTGTGCC
GGGAGGCAGAGGGCAAGCCTCTGTGCAGCGGGCGTGGAGAGTGTAGCTGCAACCAGTGCTCCTGCTTCGA
GAGTGAGTTCGGGAGGATCTACGGACCTTTCTGCGAGTGTGACAGCTTTTCCTGTGCCAGAAACAAGGGC
GTCCTATGCTCAGGCCATGGAGAGTGTCACTGTGGAGAATGCAAATGCCACGCAGGTTACATTGGGGACA
ATTGTAACTGCTCAACAGACGTCAGCACATGCAGGGCCAAGGATGGGCAGATCTGCAGTGACCGAGGCCG
TTGTGTCTGTGGGCAGTGCCAGTGCACAGAGCCTGGAGCCTTTGGGGAGACGTGTGAGAAGTGCCCAACC
TGCCCGGATGCTTGCAGCTCTAAGAGAGACTGTGTCGAATGCTTGCTACTTCACCAGGGGAAACCTGACA
ACCAGACCTGCCACCACCAGTGCAAAGATGAGGTGATCACGTGGGTAGACACCATCGTCAAAGATGACCA
GGAGGCTGTGCTTTGCTTCTACAAAACTGCTAAGGACTGCGTTATGATGTTCAGCTACACAGAACTGCCC
AATGGGAGGTCCAACTTGACGGTCCTCCGGGAGCCAGAATGTGGAAGTGCCCCCAATGCCATGACCATCC
TGCTGGCTGTGGTTGGCAGCATCCTCCTGATTGGGATGGCACTCCTGGCCATCTGGAAGCTGCTCGTCAC
CATCCACGACCGCCGAGAGTTTGCCAAGTTCCAAAGCCTCAAACCCCCTGTACAGAAAGCCCATCTCCAC
ACACACTGTCGATTTCGCCTTCAACAAGTTCAACAAATCCTACAATGGCTCAGTGGACTGAGGCTCCTGG
ATGGCTGGAGGGGGACTAAGGATGAAGACTCTGGCGTGCCTTGGACTTCCTGGACCATTTGCTCACGCTA
G

Translation (816 aa):
MPRVPATLYACLLGLCALVPRLAGLNICTSGSATSCEECLLIHPKCAWCSKEYFGNPRSITSRCDLKANL
IRNGCEGEIESPASSTHVLRNLPLSSKGSSATGSDVIQMTPQEIAVSLRPGEQTTFQLQVRQVEDYPVDL
YYLMDLSLSMKDDLENIRSLGTKLAEEMRKLTSNFRLGFGSFVDKDISPFSYTAPRYQTNPCIGYKLFPN
CVPSFGFRHLLPLTDRVDSFNEEVRKQRVSRNRDAPEGGFDAVLQAAVCKEKIGWRKDALHLLVFTTDDV
PHIALDGKLGGLVQPHDGQCHLNEANEYTASNQMDYPSLALLGEKLAENNINLIFAVTKNHYMLYKNFTA
LIPGTTVEILHGDSKNIIQLIINAYSSIRAKVELSVWDQPEDLNLFFTATCQDGISYPGQRKCEGLKIGD
TASFEVSVEARSCPGRQAAQSFTLRPVGFRDSLQVEVAYNCTCGCSTGLEPNSARCSGNGTYTCGLCECD
PGYLGTRCECQEGENQSGYQNLCREAEGKPLCSGRGECSCNQCSCFESEFGRIYGPFCECDSFSCARNKG
VLCSGHGECHCGECKCHAGYIGDNCNCSTDVSTCRAKDGQICSDRGRCVCGQCQCTEPGAFGETCEKCPT
CPDACSSKRDCVECLLLHQGKPDNQTCHHQCKDEVITWVDTIVKDDQEAVLCFYKTAKDCVMMFSYTELP
NGRSNLTVLREPECGSAPNAMTILLAVVGSILLIGMALLAIWKLLVTIHDRREFAKFQSLKPPVQKAHLH
THCRFRLQQVQQILQWLSGLRLLDGWRGTKDEDSGVPWTSWTICSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH