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Report for CCDS28237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28237.1 Public Mus musculus 16 Or5k8 23 108 98 CCDS HistoryNCBI Gene:259004Re-query CCDS DB by CCDS ID:28237.1Re-query CCDS DB by GeneID:259004See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079955.5 ENSMUSP00000078873.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079955.5Link to Ensembl Protein Viewer:ENSMUSP00000078873.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079955Re-query CCDS DB by Protein ID:ENSMUSP00000078873
Original member Current member EBI ENSMUST00000215069.1 ENSMUSP00000150202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215069.1Link to Ensembl Protein Viewer:ENSMUSP00000150202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215069Re-query CCDS DB by Protein ID:ENSMUSP00000150202
Original member Current member NCBI NM_147002.2 NP_667213.2 Accepted alive Link to Nucleotide Sequence:NM_147002.2Link to Protein Sequence:NP_667213.2Re-query CCDS DB by Nucleotide ID:NM_147002Re-query CCDS DB by Protein ID:NP_667213Link to BLAST:NP_667213.2

Chromosomal Locations for CCDS 28237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58823781 58824707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGACTGAGGACAACTACTCCTTGACAACAGAGTTCATCCTCATAGGATTCTCAGACCACCCAGACTTAA
AGATACTTCTATTCCTGGTGTTATCTACCATCTATCTGGTCACCATGGTGGGGAATCTTGGGCTGGTGGC
CTTGATCTACATGGAGCCTCGTCTCCACACACCCATGTACATCTTTCTGGGCAACCTGGCTCTCATGGAT
TCCTGTTGCTCCTGTGCCATCACTCCTAAGATGCTAGAGAACTTTTTTTCTGTGAACAGAAGGATTTCTC
TCTATGAATGCATGGCACAGTTCTATTTTCTCTGTCTTGCTGAAACTGCAGACTGCTTCCTTCTGGCAGC
CATGGCCTATGACCGCTATGTGGCCATATGCAACCCTCTGCAGTACCACACCATGATGTCCAAGAAGCTC
TGCCTTCAAATGACCACAGGAGCCTACATAGCAGGAAACCTGCATTCCATGATTCACATAGGGTTCTTGT
TCAGGTTAATTTTCTGCAGGTCTCATGTGATCAAGCACTTCTTTTGTGATGTCCTCCCCCTATACAGACT
CTCATGTGTTGACCCTTATATCAATGAACTGATGATACTCATCTTTTCTGGTTCAGTTCAAACCTTTTCC
ATTATTATAGTCTTGATTTCTTATTTCTGCATCCTTTTTACTATATTCACAATGAAGTCCAGAGAGGGAA
GAAGCAAAGCCTTATCTACTTGTGCATCCCACTTTCTGTCTGTGTCAATATTCTATGGGTCTCTTCTCTA
CACATATATTCGACCAAGTTCTATCAACGAAGGAAATGAAGACATACCTGTTGCTATTTTTTATACTCTG
GTAATTCCTTTATTAAACCCCTTTATTTATAGTCTGAGAAATAAGGAAGTAATTAATGCAATTAAAAGAA
CCATGAACAAAGGATGA

Translation (308 aa):
MTEDNYSLTTEFILIGFSDHPDLKILLFLVLSTIYLVTMVGNLGLVALIYMEPRLHTPMYIFLGNLALMD
SCCSCAITPKMLENFFSVNRRISLYECMAQFYFLCLAETADCFLLAAMAYDRYVAICNPLQYHTMMSKKL
CLQMTTGAYIAGNLHSMIHIGFLFRLIFCRSHVIKHFFCDVLPLYRLSCVDPYINELMILIFSGSVQTFS
IIIVLISYFCILFTIFTMKSREGRSKALSTCASHFLSVSIFYGSLLYTYIRPSSINEGNEDIPVAIFYTL
VIPLLNPFIYSLRNKEVINAIKRTMNKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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