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Report for CCDS28287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28287.1 Public Mus musculus 16 Adamts1 23 108 98 CCDS HistoryNCBI Gene:11504Re-query CCDS DB by CCDS ID:28287.1Re-query CCDS DB by GeneID:11504See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023610.14 ENSMUSP00000023610.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023610.14Link to Ensembl Protein Viewer:ENSMUSP00000023610.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023610Re-query CCDS DB by Protein ID:ENSMUSP00000023610
Original member Current member NCBI NM_009621.5 NP_033751.3 Accepted alive Link to Nucleotide Sequence:NM_009621.5Link to Protein Sequence:NP_033751.3Re-query CCDS DB by Nucleotide ID:NM_009621Re-query CCDS DB by Protein ID:NP_033751Link to BLAST:NP_033751.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033751.3 968 P97857 968 100% 0 0

Chromosomal Locations for CCDS 28287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 85795401 85796100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85796639 85796814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85797718 85797893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85798004 85798190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85798410 85798696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85799046 85799213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85799536 85799668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85800090 85800436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85801978 85802710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2907 nt):
ATGCAGCCAAAAGTCCCTTTGGGGTCACGCAAGCAGAAGCCCTGCTCCGACATGGGGGACGTCCAGCGGG
CAGCGAGATCTCGGGGCTCTCTGTCCGCACACATGCTGTTGCTGCTCCTCGCTTCCATAACAATGCTGCT
ATGTGCGCGGGGCGCACACGGGCGCCCCACGGAGGAAGATGAGGAGCTGGTCCTGCCCTCGCTGGAGCGC
GCCCCGGGCCACGATTCCACCACCACACGCCTTCGTCTGGACGCCTTTGGCCAGCAGCTACATCTGAAGT
TGCAGCCGGACAGCGGTTTCTTGGCGCCTGGCTTCACCCTGCAGACTGTGGGGCGCAGTCCCGGGTCCGA
GGCACAACATCTGGACCCCACCGGGGACCTGGCTCACTGCTTCTACTCTGGCACGGTGAACGGTGATCCC
GGCTCTGCCGCAGCCCTCAGCCTCTGTGAAGGTGTGCGTGGTGCCTTCTACCTACAAGGAGAGGAGTTCT
TCATTCAGCCAGCGCCTGGAGTGGCCACCGAGCGCCTGGCCCCTGCCGTGCCCGAGGAGGAGTCATCCGC
ACGGCCGCAGTTCCACATCCTGAGGCGAAGGCGGCGGGGCAGTGGCGGCGCCAAGTGCGGCGTCATGGAC
GACGAGACCCTGCCAACCAGCGACTCGCGACCCGAGAGCCAGAACACCCGGAACCAGTGGCCTGTGCGGG
ACCCCACGCCTCAGGACGCGGGAAAGCCATCAGGACCAGGAAGCATAAGGAAGAAGCGATTTGTGTCCAG
CCCCCGTTATGTGGAAACCATGCTCGTAGCTGACCAGTCCATGGCCGACTTCCACGGCAGCGGTCTAAAG
CATTACCTTCTAACCCTGTTCTCGGTGGCAGCCAGGTTTTACAAGCATCCCAGCATTAGGAATTCAATTA
GCCTGGTGGTGGTGAAGATCTTGGTCATATACGAGGAGCAGAAGGGACCAGAAGTTACCTCCAATGCAGC
TCTCACCCTTCGGAATTTCTGCAGCTGGCAGAAACAACACAACAGCCCCAGTGACCGGGATCCAGAGCAC
TATGACACTGCAATTCTGTTCACCAGACAGGATTTATGTGGCTCCCACACGTGTGACACTCTCGGAATGG
CAGATGTTGGAACCGTATGTGACCCCAGCAGGAGCTGCTCAGTCATAGAAGATGATGGTTTGCAAGCCGC
CTTCACCACAGCCCATGAATTGGGCCATGTGTTTAACATGCCGCACGATGATGCTAAGCACTGTGCCAGC
TTGAATGGTGTGAGTGGCGATTCTCATCTGATGGCCTCGATGCTCTCCAGCTTAGACCATAGCCAGCCCT
GGTCACCTTGCAGTGCCTACATGGTCACGTCCTTCCTAGATAATGGACACGGGGAATGTTTGATGGACAA
GCCCCAGAATCCAATCAAGCTCCCTTCTGATCTTCCCGGTACCTTGTACGATGCCAACCGCCAGTGTCAG
TTTACATTCGGAGAGGAATCCAAGCACTGCCCTGATGCAGCCAGCACATGTACTACCCTGTGGTGCACTG
GCACCTCCGGTGGCTTACTGGTGTGCCAAACAAAACACTTCCCTTGGGCAGATGGCACCAGCTGTGGAGA
AGGGAAGTGGTGTGTCAGTGGCAAGTGCGTGAACAAGACAGACATGAAGCATTTTGCTACTCCTGTTCAT
GGAAGCTGGGGACCATGGGGACCGTGGGGAGACTGCTCAAGAACCTGTGGTGGTGGAGTTCAATACACAA
TGAGAGAATGTGACAACCCAGTCCCAAAGAACGGAGGGAAGTACTGTGAAGGCAAACGAGTCCGCTACAG
GTCCTGTAACATCGAGGACTGTCCAGACAATAACGGAAAAACGTTCAGAGAGGAGCAGTGCGAGGCGCAC
AATGAGTTTTCCAAAGCTTCCTTTGGGAATGAGCCCACTGTAGAGTGGACACCCAAGTACGCCGGCGTCT
CGCCAAAGGACAGGTGCAAGCTCACCTGTGAAGCCAAAGGCATTGGCTACTTTTTCGTCTTACAGCCCAA
GGTTGTAGATGGCACTCCCTGTAGTCCAGACTCTACCTCTGTCTGTGTGCAAGGGCAGTGTGTGAAAGCT
GGCTGTGATCGCATCATAGACTCCAAAAAGAAGTTTGATAAGTGTGGCGTTTGTGGAGGAAACGGTTCCA
CATGCAAGAAGATGTCAGGAATAGTCACTAGTACAAGACCTGGGTATCATGACATTGTCACAATTCCTGC
TGGAGCCACCAACATTGAAGTGAAACATCGGAATCAAAGGGGGTCCAGAAACAATGGCAGCTTTCTGGCT
ATTAGAGCCGCTGATGGTACCTATATTCTGAATGGAAACTTCACTCTGTCCACACTAGAGCAAGACCTCA
CCTACAAAGGTACTGTCTTAAGGTACAGTGGTTCCTCGGCTGCGCTGGAAAGAATCCGCAGCTTTAGTCC
ACTCAAAGAACCCTTAACCATCCAGGTTCTTATGGTAGGCCATGCTCTCCGACCCAAAATTAAATTCACC
TACTTTATGAAGAAGAAGACAGAGTCATTCAACGCCATTCCCACATTTTCTGAGTGGGTGATTGAAGAGT
GGGGGGAGTGCTCCAAGACATGCGGCTCAGGTTGGCAGAGAAGAGTAGTGCAGTGCAGAGACATTAACGG
ACACCCTGCTTCCGAATGTGCAAAGGAAGTGAAGCCAGCCAGTACCAGACCTTGTGCAGACCTTCCTTGC
CCACACTGGCAGGTGGGGGATTGGTCACCATGTTCCAAAACTTGCGGGAAGGGTTACAAGAAGAGAACCT
TGAAATGTGTGTCCCACGATGGGGGCGTGTTATCAAATGAGAGCTGTGATCCTTTGAAGAAGCCAAAGCA
TTACATTGACTTTTGCACACTGACACAGTGCAGTTAA

Translation (968 aa):
MQPKVPLGSRKQKPCSDMGDVQRAARSRGSLSAHMLLLLLASITMLLCARGAHGRPTEEDEELVLPSLER
APGHDSTTTRLRLDAFGQQLHLKLQPDSGFLAPGFTLQTVGRSPGSEAQHLDPTGDLAHCFYSGTVNGDP
GSAAALSLCEGVRGAFYLQGEEFFIQPAPGVATERLAPAVPEEESSARPQFHILRRRRRGSGGAKCGVMD
DETLPTSDSRPESQNTRNQWPVRDPTPQDAGKPSGPGSIRKKRFVSSPRYVETMLVADQSMADFHGSGLK
HYLLTLFSVAARFYKHPSIRNSISLVVVKILVIYEEQKGPEVTSNAALTLRNFCSWQKQHNSPSDRDPEH
YDTAILFTRQDLCGSHTCDTLGMADVGTVCDPSRSCSVIEDDGLQAAFTTAHELGHVFNMPHDDAKHCAS
LNGVSGDSHLMASMLSSLDHSQPWSPCSAYMVTSFLDNGHGECLMDKPQNPIKLPSDLPGTLYDANRQCQ
FTFGEESKHCPDAASTCTTLWCTGTSGGLLVCQTKHFPWADGTSCGEGKWCVSGKCVNKTDMKHFATPVH
GSWGPWGPWGDCSRTCGGGVQYTMRECDNPVPKNGGKYCEGKRVRYRSCNIEDCPDNNGKTFREEQCEAH
NEFSKASFGNEPTVEWTPKYAGVSPKDRCKLTCEAKGIGYFFVLQPKVVDGTPCSPDSTSVCVQGQCVKA
GCDRIIDSKKKFDKCGVCGGNGSTCKKMSGIVTSTRPGYHDIVTIPAGATNIEVKHRNQRGSRNNGSFLA
IRAADGTYILNGNFTLSTLEQDLTYKGTVLRYSGSSAALERIRSFSPLKEPLTIQVLMVGHALRPKIKFT
YFMKKKTESFNAIPTFSEWVIEEWGECSKTCGSGWQRRVVQCRDINGHPASECAKEVKPASTRPCADLPC
PHWQVGDWSPCSKTCGKGYKKRTLKCVSHDGGVLSNESCDPLKKPKHYIDFCTLTQCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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