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Report for CCDS28337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28337.1 Public Mus musculus 16 Rcan1 23 108 98 CCDS HistoryNCBI Gene:54720Re-query CCDS DB by CCDS ID:28337.1Re-query CCDS DB by GeneID:54720See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023672.9 ENSMUSP00000023672.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023672.9Link to Ensembl Protein Viewer:ENSMUSP00000023672.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023672Re-query CCDS DB by Protein ID:ENSMUSP00000023672
Original member Current member NCBI NM_019466.4 NP_062339.2 Accepted alive Link to Nucleotide Sequence:NM_019466.4Link to Protein Sequence:NP_062339.2Re-query CCDS DB by Nucleotide ID:NM_019466Re-query CCDS DB by Protein ID:NP_062339Link to BLAST:NP_062339.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062339.2 198 Q9JHG6-2 198 100% 0 0

Chromosomal Locations for CCDS 28337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 92393453 92393628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92395866 92396025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92397263 92397436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 92399896 92399982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGCATTTTAGGGACTTTAGCTACAATTTTAGCTCCCTGATTGCTTGTGTGGCAAACGATGATGTCTTCA
GCGAAAGTGAGACCAGGGCCAAATTTGAATCCCTCTTCAGAACATATGACAAGGACACCACCTTCCAGTA
TTTTAAGAGCTTCAAACGTGTCCGGATAAACTTCAGCAACCCCTTATCTGCAGCCGATGCCAGGCTGCGG
CTGCACAAGACCGAGTTCCTGGGGAAGGAAATGAAGTTGTATTTTGCTCAGACTTTACACATAGGAAGTT
CACACCTGGCTCCGCCCAATCCCGACAAACAGTTCCTCATCTCCCCTCCGGCCTCTCCTCCCGTTGGCTG
GAAACAAGTAGAAGATGCCACCCCCGTCATAAATTACGATCTTTTATATGCCATCTCCAAGCTGGGGCCA
GGAGAGAAGTATGAACTGCATGCAGCGACAGACACCACTCCCAGTGTGGTGGTCCACGTGTGTGAGAGTG
ACCAAGAGAATGAGGAGGAAGAGGAAGAGATGGAGAGAATGAAGAGACCCAAGCCCAAAATCATCCAGAC
ACGGAGACCGGAGTACACACCCATCCACCTCAGCTGA

Translation (198 aa):
MHFRDFSYNFSSLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLR
LHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKQFLISPPASPPVGWKQVEDATPVINYDLLYAISKLGP
GEKYELHAATDTTPSVVVHVCESDQENEEEEEEMERMKRPKPKIIQTRRPEYTPIHLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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