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Report for CCDS28413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28413.1 Public Mus musculus 17 Pdcd2 23 108 98 CCDS HistoryNCBI Gene:18567Re-query CCDS DB by CCDS ID:28413.1Re-query CCDS DB by GeneID:18567See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054450.6 ENSMUSP00000052523.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054450.6Link to Ensembl Protein Viewer:ENSMUSP00000052523.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054450Re-query CCDS DB by Protein ID:ENSMUSP00000052523
Original member NCBI NM_008799.2 NP_032825.2 Updated not alive Link to Nucleotide Sequence:NM_008799.2Link to Protein Sequence:NP_032825.2Re-query CCDS DB by Nucleotide ID:NM_008799Re-query CCDS DB by Protein ID:NP_032825
Current member NCBI NM_008799.3 NP_032825.2 Accepted alive Link to Nucleotide Sequence:NM_008799.3Link to Protein Sequence:NP_032825.2Re-query CCDS DB by Nucleotide ID:NM_008799Re-query CCDS DB by Protein ID:NP_032825Link to BLAST:NP_032825.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032825.2 343 P46718 343 99.7085% 0 1

Chromosomal Locations for CCDS 28413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15521635 15521793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15521916 15522029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15522803 15522906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15525269 15525400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15526373 15526612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15526991 15527273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGCTGCAGCCGCCCCTGGTCCTGTGGAGTTGGGCTTCGCCGAGGAGGCACCGGCCTGGAGGCTGCGCA
GCGAGCAGTTTCCCAGCAAAGTGGGCGGGCGGCCCGCGTGGTTGGGCTTGGCGGAGCTGCCGGGGCCCGG
GGCGCTGGCGTGTGCGCGCTGCGGCCGCCCGCTCGCCTTCCTGCTGCAGGTGTACGCACCGCTGCCGGGC
CGGGACGACGCCTTCCACCGCAGCCTCTTTCTCTTCTGCTGTCGCGAGCCGCCGTGCTGCGCCGGCCTGC
GAGTTTTTCGTAATCAGCTACCAAGGAACAACGCATTCTACTCCTATGAGCCCCCTTCTGAAACAGAAGC
TTTGGGTACGGAATGTGTGTGCCTCCAGCTCAAGTCTGGAGCCCATCTCTGTCGGGTTTGTGGTTGCTTG
GCCCCTATGACATGCTCTAGGTGCAAACAGGCACATTACTGCAGCAAGGAGCATCAGACATTAGACTGGC
GGCTGGGACACAAGCAGGCTTGTACACAGTCAGACAAAATAGACCATATGGTTCCAGACCACAACTTCCT
GTTTCCAGAATTTGAAATTGTAACAGAAACAGAAGATGAAATTTTGCCTGAGGTTGTGGAAATGGAGGAT
TATTCTGAAGTTACAGGAAGCATGGGGGGAATTCCTGAGGAAGAACTAGATTCCATGGCAAAGCACGAAT
CCAAGGAAGATCACATATTCCAAAAGTTTAAATCTAAAATAGCCCTTGAACCAGAGCAGATTCTCAGGTA
TGGAAGAGGGATTAAACCCATCTGGATTTCTGGTGAAAATATTCCTCAAGAAAAAGATATTCCAGATTGC
CCGTGTGGTGCCAAGAGAATATTTGAATTCCAGGTCATGCCTCAGCTGTTGAACCACCTGAAGGCAGACA
GACTCGGCAGAAGCATCGACTGGGGTGTCTTGGCTGTCTTCACCTGTGCTGAGAGCTGTAGCCTGGGTAG
CGGCTACACAGAAGAATTTGTGTGGAAGCAGGATGTGACAGATACACCTTAA

Translation (343 aa):
MAAAAPGPVELGFAEEAPAWRLRSEQFPSKVGGRPAWLGLAELPGPGALACARCGRPLAFLLQVYAPLPG
RDDAFHRSLFLFCCREPPCCAGLRVFRNQLPRNNAFYSYEPPSETEALGTECVCLQLKSGAHLCRVCGCL
APMTCSRCKQAHYCSKEHQTLDWRLGHKQACTQSDKIDHMVPDHNFLFPEFEIVTETEDEILPEVVEMED
YSEVTGSMGGIPEEELDSMAKHESKEDHIFQKFKSKIALEPEQILRYGRGIKPIWISGENIPQEKDIPDC
PCGAKRIFEFQVMPQLLNHLKADRLGRSIDWGVLAVFTCAESCSLGSGYTEEFVWKQDVTDTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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