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Report for CCDS28460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28460.1 Public Mus musculus 17 Pkmyt1 23 108 98 CCDS HistoryNCBI Gene:268930Re-query CCDS DB by CCDS ID:28460.1Re-query CCDS DB by GeneID:268930See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024701.8 ENSMUSP00000024701.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024701.8Link to Ensembl Protein Viewer:ENSMUSP00000024701.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024701Re-query CCDS DB by Protein ID:ENSMUSP00000024701
Original member NCBI NM_023058.3 NP_075545.2 Updated not alive Link to Nucleotide Sequence:NM_023058.3Link to Protein Sequence:NP_075545.2Re-query CCDS DB by Nucleotide ID:NM_023058Re-query CCDS DB by Protein ID:NP_075545
Current member NCBI NM_023058.4 NP_075545.2 Accepted alive Link to Nucleotide Sequence:NM_023058.4Link to Protein Sequence:NP_075545.2Re-query CCDS DB by Nucleotide ID:NM_023058Re-query CCDS DB by Protein ID:NP_075545Link to BLAST:NP_075545.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075545.2 490 Q9ESG9 490 100% 0 0

Chromosomal Locations for CCDS 28460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23732474 23732824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23733823 23734316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23734966 23735072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23735200 23735372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23735563 23735720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23736324 23736401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23736495 23736606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGACCATGCCCACCGAGGGCACCCCACCACCCCTAAGTGGTACCCCCATCCCAGTTCCAGCTTACTTCC
GACACGCAGAGCCTGGTTTCTCCCTCAAAAGGCCTGGGGGCCTCAGTCGGAGCCTCCCACCTCGGCCCCC
TGCCAAGGGCTGCATCCCTGTCAGCCGTCTATTCCCCCCTCGCACCCCAGGCTGGCACCAGCCCCAGCCC
CGGAGGGTGTCTTTCCTGTGTGAGACCTCAGAGCCCCTGCAGAGTCCTGGGTATGACCCGAGCCGGCCCG
AGTCCTTCTTTCAGCAGAACTTCCAGAGGCTCAGCCGCCTGGGTCATGGCTCATATGGAGAAGTCTTCAA
GGTGCGCTCTAAGGAAGATGGGCGACTCTATGCTGTTAAGCGCTACATGTCGCCATTCCGCGGCCCCAAA
GACCGAACTCGTAAACTGGCTGAGGTAGGTGGCCATGAGAAAGTGGGGCAGCATCCACACTGCGTGAGAC
TGGAGCGGGCCTGGGAGGAGGGTGGCATCCTATACCTGCAGACAGAACTCTGCGGGCCCAGCCTGCAGCA
ACACTGTGAAGCCTGGGGGGCCAGCCTGCCAGAGGCCCAGGTCTGGGGCTACTTGCGGGACATTCTTCTG
GCTCTGGACCATCTACATAGTCAAGGCCTAGTTCACCTTGATGTCAAGCCTGCCAACATCTTCTTGGGCC
CCCGGGGCCGCTGCAAGCTGGGCGACTTTGGACTACTGGTGGAGCTGGGTTCAGCCGGTGCTGGCGAGGC
CCAGGAGGGAGATCCTCGCTACATGGCCCCAGAACTGCTGCAGGGCTCTTATGGGACAGCAGCAGATGTG
TTCAGTCTGGGTCTCACCATCTTGGAAGTGGCCTGTAACATGGAACTGCCCCATGGTGGGGAGGGCTGGC
AGCAGCTGCGCCAGGGATACTTGCCCCCTGAGTTCACTGCTGGTCTGTCTTCTGAGCTGCGTTCTGTCCT
CGCCATGATGCTGGAGCCTGACCCCCAGCTTCGAGCCACAGCTGAGGCCCTGTTGGCCTTACCCATGCTG
AGGCAGCCACGTCCCTGGAATGTTCTGTGGTATATGGCTGCGGAAGCCCTAAGTCGAGGCTGGGCCCTGT
GGCAGGCCCTGGTCACTCTGCTCTGCTGGCTCTGGCACGGGCTGGTGCATCCTGCCAGTTGGCTGCAGCC
TCCAGGCCCACCGGCCACACCACCTGGCTCTCCACCTTGCAGCCCCCTCCTGGACAGCACCCTCTCCAGC
AGCTGGGATAATGACAGCATAGGTCCCTCACTCTCCCCAGAGACCGTCCTGTCCCGGATCACTAGAAGAA
CCTCTACCCCTCGGGGCAGGTACATACCTAGGGATGCCCTGGACCTAACTGATGTGGACTCAGAGCCTCC
AAGAGGTCCCTGCCCCACCTTTGAGCCAAGGAACCTCCTCAGCCTGTTTGAGGACTCCCTAGACCCAGCC
TGA

Translation (490 aa):
MTMPTEGTPPPLSGTPIPVPAYFRHAEPGFSLKRPGGLSRSLPPRPPAKGCIPVSRLFPPRTPGWHQPQP
RRVSFLCETSEPLQSPGYDPSRPESFFQQNFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRYMSPFRGPK
DRTRKLAEVGGHEKVGQHPHCVRLERAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDILL
ALDHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGSAGAGEAQEGDPRYMAPELLQGSYGTAADV
FSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLAMMLEPDPQLRATAEALLALPML
RQPRPWNVLWYMAAEALSRGWALWQALVTLLCWLWHGLVHPASWLQPPGPPATPPGSPPCSPLLDSTLSS
SWDNDSIGPSLSPETVLSRITRRTSTPRGRYIPRDALDLTDVDSEPPRGPCPTFEPRNLLSLFEDSLDPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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