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Report for CCDS28516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28516.1 Public Mus musculus 17 Prss29 23 108 98 CCDS HistoryNCBI Gene:114662Re-query CCDS DB by CCDS ID:28516.1Re-query CCDS DB by GeneID:114662See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024993.8 ENSMUSP00000024993.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024993.8Link to Ensembl Protein Viewer:ENSMUSP00000024993.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024993Re-query CCDS DB by Protein ID:ENSMUSP00000024993
Original member Current member NCBI NM_053260.3 NP_444490.2 Accepted alive Link to Nucleotide Sequence:NM_053260.3Link to Protein Sequence:NP_444490.2Re-query CCDS DB by Nucleotide ID:NM_053260Re-query CCDS DB by Protein ID:NP_444490Link to BLAST:NP_444490.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444490.2 279 Q99MS4 279 99.6416% 0 1

Chromosomal Locations for CCDS 28516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25320283 25320343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25320496 25320676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25320872 25321137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25322092 25322258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25322343 25322507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGCTGATCCAGCTGTGCCTGACCCTCTTCTTTCTTGGGTGCTCCATTGCTGGAACCCCAGCACCTGGGC
CTGAGGGCGTTCTGATGGGCATCGTGGGGGGTCATAGTGCCCCACAGGGGAAGTGGCCATGGCAGGTCAG
CCTGAGGATCTATAGATACTACTGGGCCTTCTGGGTGCACAACTGTGGGGGCTCCATCATCCACCCACAG
TGGGTGCTGACTGCTGCCCACTGCATTCGTGAGAGAGATGCCGACCCATCAGTCTTTCGGATCCGTGTTG
GGGAGGCGTACCTCTATGGGGGCAAGGAGCTGCTGAGTGTGAGCCGGGTCATCATCCACCCAGACTTTGT
CCACGCTGGCCTGGGTTCAGATGTGGCTCTGCTCCAGCTGGCAGTGTCTGTACAATCCTTTCCTAATGTC
AAGCCAGTCAAGCTGCCCTCTGAGTCTCTTGAGGTCACCAAGAAGGATGTGTGCTGGGTGACCGGCTGGG
GTGCAGTGAGCACACACAGGTCGCTGCCTCCTCCCTACCGCCTACAGCAGGTGCAGGTAAAGATAATTGA
CAACTCACTTTGTGAGGAGATGTACCACAATGCCACCAGGCACCGCAATCGTGGCCAGAAACTGATCCTA
AAGGACATGTTATGTGCAGGCAACCAGGGCCAAGATTCCTGCTATGGTGACTCAGGTGGCCCTCTGGTCT
GCAATGTGACAGGCTCCTGGACCCTGGTGGGAGTGGTGAGCTGGGGCTATGGCTGTGCCCTCAGGGACTT
CCCTGGGGTCTATGCACGTGTACAGTCCTTCCTGCCCTGGATCACGCAGCAGATGCAGAGGTTCTCCTGA

Translation (279 aa):
MLIQLCLTLFFLGCSIAGTPAPGPEGVLMGIVGGHSAPQGKWPWQVSLRIYRYYWAFWVHNCGGSIIHPQ
WVLTAAHCIRERDADPSVFRIRVGEAYLYGGKELLSVSRVIIHPDFVHAGLGSDVALLQLAVSVQSFPNV
KPVKLPSESLEVTKKDVCWVTGWGAVSTHRSLPPPYRLQQVQVKIIDNSLCEEMYHNATRHRNRGQKLIL
KDMLCAGNQGQDSCYGDSGGPLVCNVTGSWTLVGVVSWGYGCALRDFPGVYARVQSFLPWITQQMQRFS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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