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Report for CCDS28527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28527.1 Public Mus musculus 17 Haghl 23 108 98 CCDS HistoryNCBI Gene:68977Re-query CCDS DB by CCDS ID:28527.1Re-query CCDS DB by GeneID:68977See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28527.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077938.9 ENSMUSP00000077091.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077938.9Link to Ensembl Protein Viewer:ENSMUSP00000077091.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077938Re-query CCDS DB by Protein ID:ENSMUSP00000077091
Original member Current member EBI ENSMUST00000150324.7 ENSMUSP00000119647.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150324.7Link to Ensembl Protein Viewer:ENSMUSP00000119647.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150324Re-query CCDS DB by Protein ID:ENSMUSP00000119647
Original member Current member NCBI NM_001271433.1 NP_001258362.1 Accepted alive Link to Nucleotide Sequence:NM_001271433.1Link to Protein Sequence:NP_001258362.1Re-query CCDS DB by Nucleotide ID:NM_001271433Re-query CCDS DB by Protein ID:NP_001258362Link to BLAST:NP_001258362.1
Original member Current member NCBI NM_026897.3 NP_081173.1 Accepted alive Link to Nucleotide Sequence:NM_026897.3Link to Protein Sequence:NP_081173.1Re-query CCDS DB by Nucleotide ID:NM_026897Re-query CCDS DB by Protein ID:NP_081173Link to BLAST:NP_081173.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258362.1 283 Q9DB32-1 283 100% 0 0
NP_081173.1 283 Q9DB32-1 283 100% 0 0

Chromosomal Locations for CCDS 28527.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25783010 25783178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25783503 25783582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25783785 25783886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25784075 25784178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25784260 25784368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25784455 25784572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25784661 25784725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25785004 25785108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGAAGGTCAAAGTCATCCCGGTACTTGAAGACAACTACATGTACCTGATCATTGAGGAACACACGCGGG
AGGCCGTAGCTATAGACGTGGCTGTGGCCGAGAGGTTGCTGGAGATTGCGGGTCGCGAGGGAGTGTCTCT
GACCATGGTGCTGTCCACCCATCATCACTGGGACCACACACGTGGAAATGCGGAGCTGGCACACATTCTG
CCAGGATTGGCTGTCTTGGGAGCAGATGAGCGCATTTGCGCTCTAACCCGAAGGCTGGAACATGGAGAAG
GGCTTCAGTTTGGGGCCATCCACGTGCGATGCCTCTTGACGCCAGGCCACACCTCTGGCCACATGAGCTA
CTTCCTGTGGGAGGATGACTGCCCGGACTCACCAGCCCTCTTCTCTGGGGATGCTCTGTCAGTGGCAGGC
TGTGGCTGGCACCTGGAGGACACTGCCCAGCAGATGTACCAGAGCTTGGCCAAGACTCTGGGTACCCTTC
CACCCGAGACGAAGGTGTTCTGTGGTCATGAGCATACGCTGAGCAATCTTGAGTTTGCACAGAAAGTGGA
GCCCTGCAACGAACACGTGCAAGCTAAGCTGTCCTGGGCCCAGGAGAGGGATGACGAGGATATTCCTACT
GTGCCTTCGACGCTGGGCGAGGAGCTCATGTACAACCCTTTCCTGAGGGTGACAGAGGATGCAGTCCGTG
CGTTCACAGGCCAGGTGGCCCCAGCCCAGGTCCTGGAGGCCCTCTGCAGGGAGCGAGCGCGCTTCCAGCC
TGCTGTGGAGCCACCACAGCCGCAGGTTCGGGCACTCCTGGCCTTACAGTGGGGGCTTCTGAGCACACAC
CAGAAAAAGTGA

Translation (283 aa):
MKVKVIPVLEDNYMYLIIEEHTREAVAIDVAVAERLLEIAGREGVSLTMVLSTHHHWDHTRGNAELAHIL
PGLAVLGADERICALTRRLEHGEGLQFGAIHVRCLLTPGHTSGHMSYFLWEDDCPDSPALFSGDALSVAG
CGWHLEDTAQQMYQSLAKTLGTLPPETKVFCGHEHTLSNLEFAQKVEPCNEHVQAKLSWAQERDDEDIPT
VPSTLGEELMYNPFLRVTEDAVRAFTGQVAPAQVLEALCRERARFQPAVEPPQPQVRALLALQWGLLSTH
QKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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