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Report for CCDS28569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28569.1 Public Mus musculus 17 Ilrun 23 108 98 CCDS HistoryNCBI Gene:224647Re-query CCDS DB by CCDS ID:28569.1Re-query CCDS DB by GeneID:224647See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28569.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114863.9 ENSMUSP00000110513.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114863.9Link to Ensembl Protein Viewer:ENSMUSP00000110513.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114863Re-query CCDS DB by Protein ID:ENSMUSP00000110513
Original member Current member NCBI NM_001033279.3 NP_001028451.2 Accepted alive Link to Nucleotide Sequence:NM_001033279.3Link to Protein Sequence:NP_001028451.2Re-query CCDS DB by Nucleotide ID:NM_001033279Re-query CCDS DB by Protein ID:NP_001028451Link to BLAST:NP_001028451.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028451.2 291 Q3TT38 291 100% 0 0

Chromosomal Locations for CCDS 28569.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27753960 27753995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27767911 27768239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27786071 27786268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27793909 27794063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27820177 27820334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGAGGGCATGGACGTGGACTTGGATCCGGAGCTCATGCAGAAGTTCAGCTGCCTGGGCACCACAGACA
AGGACGTGCTCATCTCCGAGTTCCAGCGGCTACTCGGCTTCCAGCTCAACCCGGCCGGCTGCGCCTTCTT
CCTGGACATGACCAACTGGAACTTACAAGCAGCGATTGGCGCCTATTATGACTTCGAGAGCCCAAATATC
AGTGTGCCCTCCATGTCCTTTGTTGAAGATGTCACCATAGGAGAAGGGGAGTCAATACCCCCTGATACCC
AGTTCATAAAAACTTGGCGGATACAGAATTCTGGAGCAGAGGCCTGGCCTCCAGGGGTTTGTCTTAAATA
TGTCGGGGGAGACCAGTTTGGACATGTGAACATGGTGATGGTGAGATCACTAGAGCCCCAAGAGATCGCA
GACGTCAGCGTCCAGATGTGCAGTCCCAGCAGAGCAGGCATGTACCAGGGACAGTGGCGGATGTGCACTG
CTACTGGACTCTACTATGGAGATGTCATCTGGGTGATTCTCAGTGTGGAGGTGGGTGGACTTTTAGGAGT
AACGCAGCAGCTGTCATCTTTTGAAACGGAATTCAACACACAGCCACATCGCAAGGTAGAAGGAAACTTC
AACCCGTTTGCCTCTCCCCAAAAGAACCGACAATCAGATGAAAACAACCTAACAGACCCTGGGGGTTCCG
AGTTCGACTCGATCAGCAAAAATACATGGGCTCCTGTTCCTGAGCAAAGCGAGCAAGATCAGGATAGACT
GTCACAGAGCTCTGTAAATCTGTCCCCCAGCAGTCCCGCAAACAACTTATCAGTAGTGACTTACAGTAAG
GGGCTCCACGGGCCTTACCCCTTCGGCCAGTCTTAA

Translation (291 aa):
MEGMDVDLDPELMQKFSCLGTTDKDVLISEFQRLLGFQLNPAGCAFFLDMTNWNLQAAIGAYYDFESPNI
SVPSMSFVEDVTIGEGESIPPDTQFIKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQEIA
DVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSVEVGGLLGVTQQLSSFETEFNTQPHRKVEGNF
NPFASPQKNRQSDENNLTDPGGSEFDSISKNTWAPVPEQSEQDQDRLSQSSVNLSPSSPANNLSVVTYSK
GLHGPYPFGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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