NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28651.1 Public Mus musculus 17 Egfl8 23 108 98 CCDS HistoryNCBI Gene:81701Re-query CCDS DB by CCDS ID:28651.1Re-query CCDS DB by GeneID:81701See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28651.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015611.13 ENSMUSP00000015611.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015611.13Link to Ensembl Protein Viewer:ENSMUSP00000015611.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000015611Re-query CCDS DB by Protein ID:ENSMUSP00000015611
Original member NCBI NM_152922.3 NP_690886.3 Updated not alive Link to Nucleotide Sequence:NM_152922.3Link to Protein Sequence:NP_690886.3Re-query CCDS DB by Nucleotide ID:NM_152922Re-query CCDS DB by Protein ID:NP_690886
Current member NCBI NM_152922.4 NP_690886.3 Accepted alive Link to Nucleotide Sequence:NM_152922.4Link to Protein Sequence:NP_690886.3Re-query CCDS DB by Nucleotide ID:NM_152922Re-query CCDS DB by Protein ID:NP_690886Link to BLAST:NP_690886.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690886.3 293 Q6GUQ1-1 293 100% 0 0

Chromosomal Locations for CCDS 28651.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34613538 34613581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34613777 34613930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34614009 34614091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34614170 34614340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34614484 34614579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34614669 34614778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34614879 34615001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34615167 34615267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGGGCTCTGGGCTGAGCTGTGCATTTCCCTACGAGGACTCTCATTCTTCCTGGTGCTGATGACGGGCG
AAGGGACCAGAGGAGGATCTTTCAAAGAGAGTTTGGGAGTGTGCTCCAAGCAGACGCTGCTGGTTCCTCT
CCGTTACAACGAGTCCTATAGTCAACCGGTGTACAAACCCTACCTGACCTTGTGTGCGGGGAGGCGCATA
TGTAGCACCTACAGGACCACATACCGTGTGGCCTGGCGGGAGGTGAGGCGGGAGGTACCACAGACACACG
TGGTGTGCTGTCAGGGCTGGAAGAAGCCACACCCAGGAGCTCTCACCTGTGATGCCATCTGCTCCAAGCC
TTGTCTTAATGGAGGTGTCTGCACTGGACCAGACCGGTGCGAGTGTGCCCCAGGCTGGGGAGGAAAGCAT
TGCCACGTGGATGTCGATGAATGCAGGGCCAGCCTTACCCTCTGCTCTCATGGCTGCCTCAACACACTGG
GCAGCTTCTTGTGCAGCTGTCCACACCCCCTGGTGCTGGGTCTCGATGGACGCACCTGTGCAGGGGGGCC
TCCAGAGTCCCCGACAAGTGCCAGCATCCTCAGTGTGGCAGTTCGGGAAGCAGACAGCGAAGAGGAGCGA
GCCCTGAGGTGGGAGGTTGCAGAGCTTCGTGGGCGTCTGGAGAAGCTGGAGCAGTGGGCCACACAGGCTG
GGGCCTGGGTTCGAGCAGTGCTGCCCATGCCCCCTGAAGAGCTGCGGCCTGAACAGGTGGCTGAGCTTTG
GGGCCGGGGTGACAGAATTGAGTCCCTCAGCGACCAGGTGCTGCTACTGGAGGAAAGACTGGGTGCCTGT
GCCTGTGAGGATAACAGCCTGGGCCCAAGCCTGCGTGGATGA

Translation (293 aa):
MGLWAELCISLRGLSFFLVLMTGEGTRGGSFKESLGVCSKQTLLVPLRYNESYSQPVYKPYLTLCAGRRI
CSTYRTTYRVAWREVRREVPQTHVVCCQGWKKPHPGALTCDAICSKPCLNGGVCTGPDRCECAPGWGGKH
CHVDVDECRASLTLCSHGCLNTLGSFLCSCPHPLVLGLDGRTCAGGPPESPTSASILSVAVREADSEEER
ALRWEVAELRGRLEKLEQWATQAGAWVRAVLPMPPEELRPEQVAELWGRGDRIESLSDQVLLLEERLGAC
ACEDNSLGPSLRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH