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Report for CCDS28683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28683.1 Public Mus musculus 17 Ly6g5b 23 108 98 CCDS HistoryNCBI Gene:266614Re-query CCDS DB by CCDS ID:28683.1Re-query CCDS DB by GeneID:266614See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062657.4 ENSMUSP00000052133.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062657.4Link to Ensembl Protein Viewer:ENSMUSP00000052133.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062657Re-query CCDS DB by Protein ID:ENSMUSP00000052133
Original member Current member NCBI NM_148939.3 NP_683741.1 Accepted alive Link to Nucleotide Sequence:NM_148939.3Link to Protein Sequence:NP_683741.1Re-query CCDS DB by Nucleotide ID:NM_148939Re-query CCDS DB by Protein ID:NP_683741Link to BLAST:NP_683741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683741.1 194 Q8K1T4-1 194 100% 0 0

Chromosomal Locations for CCDS 28683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35114415 35114812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35115118 35115246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35115343 35115400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGAGGGCCCGCGTGCTTGTAGGTATGCTGACCATGGTGGGCTTTGCGATGGGGAAGGCTCCAGTTGCCA
GAGTCCGTACCTGCCACCTGTGCCTCTTAGAAGACCCTTCGCTAGGCTGCATTTCTGGCTCAGAAAAGTG
CACCATCAGCCTTCCATCGCCGTGTATGGTGATCACCATCTATAAAAATACTACTGTTCGCTTCCACGTA
CGGGGCTGTGGACAGCATCATTCCTACCGATGTCAAGAAAGGCATGTGATCTACCAATCAGACTACTTGT
ATAAGGCTGATTGCTGCCAGTACGATTACTGCAACTCCTGGTCCAGTGCTCAGCACCAGAGCACCCTGCG
TGGGTCCCCAGGAAGCCATCTGGGCATGCCCCTGTCAGCGTCTCAGATAAAACAGTTTTACCAGGCCCTG
AACCTCTCTCTGCCTCAGCCTGGCTTCCATGCTCATAAGGTGTCTGAGGGCCTGGAGTCTCTCATTCTGC
CCCCGGAGCTGGGCTTGTCCATTGCCGACCTTCGCCAAATATACTTGTTCCTCAACAGTTCAGGACTTCT
GGTCCTTCCCTGGGATAGACCCTGA

Translation (194 aa):
MRARVLVGMLTMVGFAMGKAPVARVRTCHLCLLEDPSLGCISGSEKCTISLPSPCMVITIYKNTTVRFHV
RGCGQHHSYRCQERHVIYQSDYLYKADCCQYDYCNSWSSAQHQSTLRGSPGSHLGMPLSASQIKQFYQAL
NLSLPQPGFHAHKVSEGLESLILPPELGLSIADLRQIYLFLNSSGLLVLPWDRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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