NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28742.1 Public Mus musculus 17 Or1o3 23 108 98 CCDS HistoryNCBI Gene:258503Re-query CCDS DB by CCDS ID:28742.1Re-query CCDS DB by GeneID:258503See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080759.4 ENSMUSP00000094936.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080759.4Link to Ensembl Protein Viewer:ENSMUSP00000094936.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080759Re-query CCDS DB by Protein ID:ENSMUSP00000094936
Original member Current member NCBI NM_146510.1 NP_666721.1 Accepted alive Link to Nucleotide Sequence:NM_146510.1Link to Protein Sequence:NP_666721.1Re-query CCDS DB by Nucleotide ID:NM_146510Re-query CCDS DB by Protein ID:NP_666721Link to BLAST:NP_666721.1

Chromosomal Locations for CCDS 28742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37262733 37263662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGAACTGCAGTCAGGCTCCTACATTCATCCTCTTGGGACTGTCTAGTGATGCAGAGAAATGGCAGCCCC
TCTTTAGCATCTTCCTTGTTCTCTACTTGCTGGGCCTTTTAGGGAACCTGCTACTTCTGTTAGCTATTGG
CACTGATGTCCACCTCCACACCCCCATGTATTTCTTCCTCAGTCAGCTCTCACTCGTGGATCTTTGCTTC
ATCACCACCACAGCCCCTAAAATGCTGGAGGCTCTGTGGACTGGAGATGGATCAATCTCATTCTCTGGAT
GCCTGACTCAGTTGTACTTCTTTGCTGTTTTTGCTGACATGGATAACCTGCTTCTAGCAGTCATGGCTAT
TGACCGCTATGCTGCTATCTGCCACCCACTGCTGTACCCACTTCTAATGACTCCTTGTAGATGTAGAGTT
CTGGTCAGTGGGTCATGGGGAGTAGCTCATTGTGTGTCTCTGACCCATACTTTGTTGTTCTCTAAGTTAT
ATTTTCATAACAATCAAGAGATTCCTCATTTTTTCTGTGACTTTGGGCCTCTCTTATTGCTTTCCTGCTC
TGATACATACCTCAATGAGAGTCTGATGATGGCTTTGAGTGGACTTTTAGCAATCAGTGCATTTCTCTGC
ATTGTAAGTTCTTATGGTTGTATTTTTTATGCTGTGGCTAAGGTTCCATCAGCACAGGGGAAACGGAAAG
CCCTGGCCACATGTAGTTCCCACCTCTCTGTAGTCCTCCTTTTCTACAGCACAGTCTTTGCTACCTACCT
GAAGCCCCCATCTAGTTCTCACTCCTCTCAGGAGGTGGTAGCTGCTGTCATGTATACTCTGGTAACACCC
ACTCTGAACCCCTTCATTTATAGTCTGAGAAACAAGGATGTTAAGAGTTCATTGAGAAGGATCTTGAACA
TGGTGAAATCTCAGGACTAA

Translation (309 aa):
MNCSQAPTFILLGLSSDAEKWQPLFSIFLVLYLLGLLGNLLLLLAIGTDVHLHTPMYFFLSQLSLVDLCF
ITTTAPKMLEALWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCRV
LVSGSWGVAHCVSLTHTLLFSKLYFHNNQEIPHFFCDFGPLLLLSCSDTYLNESLMMALSGLLAISAFLC
IVSSYGCIFYAVAKVPSAQGKRKALATCSSHLSVVLLFYSTVFATYLKPPSSSHSSQEVVAAVMYTLVTP
TLNPFIYSLRNKDVKSSLRRILNMVKSQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH