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Report for CCDS28766.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28766.1 Public Mus musculus 17 Or2b4 23 108 98 CCDS HistoryNCBI Gene:259064Re-query CCDS DB by CCDS ID:28766.1Re-query CCDS DB by GeneID:259064See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28766.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053599.6 ENSMUSP00000050544.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053599.6Link to Ensembl Protein Viewer:ENSMUSP00000050544.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053599Re-query CCDS DB by Protein ID:ENSMUSP00000050544
Original member Current member EBI ENSMUST00000215168.1 ENSMUSP00000148904.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215168.1Link to Ensembl Protein Viewer:ENSMUSP00000148904.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215168Re-query CCDS DB by Protein ID:ENSMUSP00000148904
Original member Current member EBI ENSMUST00000217365.1 ENSMUSP00000149754.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217365.1Link to Ensembl Protein Viewer:ENSMUSP00000149754.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217365Re-query CCDS DB by Protein ID:ENSMUSP00000149754
Original member Current member EBI ENSMUST00000216478.1 ENSMUSP00000150687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216478.1Link to Ensembl Protein Viewer:ENSMUSP00000150687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216478Re-query CCDS DB by Protein ID:ENSMUSP00000150687
Original member Current member NCBI NM_147062.2 NP_667273.1 Accepted alive Link to Nucleotide Sequence:NM_147062.2Link to Protein Sequence:NP_667273.1Re-query CCDS DB by Nucleotide ID:NM_147062Re-query CCDS DB by Protein ID:NP_667273Link to BLAST:NP_667273.1

Chromosomal Locations for CCDS 28766.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37805147 37806094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGTGGATCAATAATCAGAGCTCAGTAGATGACTTCATCTTATTGGGATTTTCTGACCGGCCTTGGCTGG
AGACACCTCTCTTTGTAATTTTTCTGGTGGCCTACATCTTTGCCTTATTTGGTAATATCTCCATTATCCT
AGTTTCCCGCCTAGACCCCCAGCTTGACAGCCCCATGTACTTTTTTGTCTCCAACCTTTCTCTTCTGGAC
CTCTGCTATACTACGAGCACTGTCCCTCAGATGTTGGTCAACCTTAGAGGGCCTGAAAAGACCATCAGCT
ATGGTGGCTGTGTGGCCCAGCTCTATATTTTCTTGGCTTTGGGCTCAACTGAATGTATCCTTCTGGCCAT
CATGGCCTTTGACCGTTTTGCTGCCATTTGCAGGCCCCTTCACTATCCTATCATCATGAACCAGAAACGA
TGCATTCATATGGCCACAGGAACCTGGATTAGCGGATTTGCAAACTCTCTTGTGCAGTCCACCCTCACTG
TGGTAGCCCCCAGGTGTGGACAGAGGGTAATAGACCATTTCTTCTGTGAAGTCCCAGCCCTTTTGAAACT
AGCTTGCACTGACACAAGTGTGAATGAAGCTGAGCTTAATGTTCTTGGAGCTTTGCTGCTCTTGGTGCCT
CTCAGCCTCATCCTGGGTACCTATGTGTTCATTGCTCAAGCAGTACTGAAACTCCGTTCTGCTGAGAGTC
GCCGGAAGGCATTTAATACCTGTGCTTCACATCTGCTGGTGGTCTCCCTCTTCTATTTCACAGCTATCAG
TATGTATGTTCAGCCTCCCTCAAGCTACTCTCATGAAAGGGGCAAGATCATGGCTCTGTTCTATGGCATT
GTCACACCTACCCTCAACCCATTCATCTACACTTTGAGGAATAAGGATGTTAAGGCTGCCCTGAGGAGGG
CACTAACAAAGGAGTTTTGGGTCAAGGCAAGGCAATAG

Translation (315 aa):
MWINNQSSVDDFILLGFSDRPWLETPLFVIFLVAYIFALFGNISIILVSRLDPQLDSPMYFFVSNLSLLD
LCYTTSTVPQMLVNLRGPEKTISYGGCVAQLYIFLALGSTECILLAIMAFDRFAAICRPLHYPIIMNQKR
CIHMATGTWISGFANSLVQSTLTVVAPRCGQRVIDHFFCEVPALLKLACTDTSVNEAELNVLGALLLLVP
LSLILGTYVFIAQAVLKLRSAESRRKAFNTCASHLLVVSLFYFTAISMYVQPPSSYSHERGKIMALFYGI
VTPTLNPFIYTLRNKDVKAALRRALTKEFWVKARQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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