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Report for CCDS28768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28768.1 Public Mus musculus 17 Or14j5 23 108 98 CCDS HistoryNCBI Gene:258892Re-query CCDS DB by CCDS ID:28768.1Re-query CCDS DB by GeneID:258892See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28768.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174139.2 ENSMUSP00000134080.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174139.2Link to Ensembl Protein Viewer:ENSMUSP00000134080.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000174139Re-query CCDS DB by Protein ID:ENSMUSP00000134080
Original member Current member EBI ENSMUST00000213844.1 ENSMUSP00000149896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213844.1Link to Ensembl Protein Viewer:ENSMUSP00000149896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213844Re-query CCDS DB by Protein ID:ENSMUSP00000149896
Original member Current member EBI ENSMUST00000217487.1 ENSMUSP00000151205.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217487.1Link to Ensembl Protein Viewer:ENSMUSP00000151205.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217487Re-query CCDS DB by Protein ID:ENSMUSP00000151205
Original member Current member NCBI NM_146890.2 NP_667101.1 Accepted alive Link to Nucleotide Sequence:NM_146890.2Link to Protein Sequence:NP_667101.1Re-query CCDS DB by Nucleotide ID:NM_146890Re-query CCDS DB by Protein ID:NP_667101Link to BLAST:NP_667101.1

Chromosomal Locations for CCDS 28768.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37850594 37851553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGACTGCAAGAAACATGACAACAATGAGTGGATTCCTCCTCATGGGGTTCTCTGACAACCATGAATTGC
AGATCTTACAGGCTTTGCTGTTTTTGCTGACATACCTATTGGGCTCAGCAGGGAACTTCATCATTATCAC
CATCACAACACTGGACCCACAGCTCCAGTCTCCAATGTATTATTTTCTGAAGCAACTTTCCACTCTGGAC
CTCTCATCCCTCTCTGTCACAGTTCCTCAGTATGTTGCCAGTTCCCTGGCACGAAGTGGCTACATTTCAT
ATGGGCAATGCATGCTGCAGATATTTTTCTTCACAGGTTTGGCCTGGAGTGAAATGGCCACTCTCACAGT
GATGTCTTATGATCGCTATGTGGCCATCTGCCTCCCACTGCACTATGAGGTCATAATGAGTCCCAGAAAG
TGCACTTGGGCTGTGGCAGCTGTGTGGCTAAGTGGAGGTATCTCAGGAACATTATTCACAGCAAGTACAC
TCTCTATCAGATTCTGTGGGGATAAAATTATTCACCAGTTCTTCTGTGATATCCCGCAATTGCTCAAGCT
CTCCTGCTCTAATGATTACTTTGGAGTACTGGAAGTGTCTACTTTCATGTCTGTAATGGCCTTTGCCTGC
TTTGTGGGGATTGCCTTCTCCTATGGCCAGATATTCTCTACAGTTCTCAGGATGCCCTCTGCTGAAGGCC
GATCTAAGGTCTTCTCCACCTGCCTGCCCCATCTCTTCGTTGTTTCATTTTTTCTCTCAACAGGCATTTG
TGCCTATCTAAAGCCAACCTCAGACTCACCAACTGCTTTAGACCTCATGCTCTCTATCTTTTACACACTA
CTACCCCCAACCCTCAACCCTGTTATCTATAGTCTGAGAAATGAGTCCTTGAAAAGAGCACTAAAGAAGT
TACTGCTAAGTGAAGAATTCATTAGGAAAAAATGTTTGTTCTATTTTTAG

Translation (319 aa):
MTARNMTTMSGFLLMGFSDNHELQILQALLFLLTYLLGSAGNFIIITITTLDPQLQSPMYYFLKQLSTLD
LSSLSVTVPQYVASSLARSGYISYGQCMLQIFFFTGLAWSEMATLTVMSYDRYVAICLPLHYEVIMSPRK
CTWAVAAVWLSGGISGTLFTASTLSIRFCGDKIIHQFFCDIPQLLKLSCSNDYFGVLEVSTFMSVMAFAC
FVGIAFSYGQIFSTVLRMPSAEGRSKVFSTCLPHLFVVSFFLSTGICAYLKPTSDSPTALDLMLSIFYTL
LPPTLNPVIYSLRNESLKRALKKLLLSEEFIRKKCLFYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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