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Report for CCDS28779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28779.1 Public Mus musculus 17 Or2n1e 23 108 98 CCDS HistoryNCBI Gene:170648Re-query CCDS DB by CCDS ID:28779.1Re-query CCDS DB by GeneID:170648See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071871.4 ENSMUSP00000071767.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071871.4Link to Ensembl Protein Viewer:ENSMUSP00000071767.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000071871Re-query CCDS DB by Protein ID:ENSMUSP00000071767
Original member Current member EBI ENSMUST00000172843.8 ENSMUSP00000133698.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172843.8Link to Ensembl Protein Viewer:ENSMUSP00000133698.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172843Re-query CCDS DB by Protein ID:ENSMUSP00000133698
Original member Current member EBI ENSMUST00000173841.2 ENSMUSP00000133828.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173841.2Link to Ensembl Protein Viewer:ENSMUSP00000133828.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000173841Re-query CCDS DB by Protein ID:ENSMUSP00000133828
Original member Current member NCBI NM_130868.1 NP_570938.1 Accepted alive Link to Nucleotide Sequence:NM_130868.1Link to Protein Sequence:NP_570938.1Re-query CCDS DB by Nucleotide ID:NM_130868Re-query CCDS DB by Protein ID:NP_570938Link to BLAST:NP_570938.1

Chromosomal Locations for CCDS 28779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38274773 38275711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCTGTAACCAATGAAAGCCACCCAAAAGAATTCATCCTACTGGGCTTTGCTAACCATCCTTGGCTGG
AACTCCCTCTCTTTGTTACTCTTCTGATAACATATCCCATGGCTTTGATGGGGAACATCGCCATCATTCT
GGTGTCCACCTTAGACCCTCGTCTCTACAGCCCCATGTACTTTTTCCTCAAGAATCTCTCCTTTCTGGAC
ATGTGCTACACCACAAGCATTGTGCCTCAGATGCTGTTTAACCTGGGAAGCTCCAGAAAAACCATTACTT
ACATTGGATGTGTTGTTCAACTTTATGTCTTCCACATAATGGGAGGCACAGAATGTCTACTTTTAGCTAT
TATGTCCTTTGATCGATATGTGGCTATCTGCAAACCTCTCCACTACACTCTCATTATGAACCAAAGAGTA
TGCATTTTGTCAGTATCTATTATGTGGCTGACTGGAGTGATCTTTGGTTTTTCAGAGGCTACACTTACAT
TGCAACTGCCATTATGTGGCACAAATAAATTGGATCATTTATTGTGTGAAATCCCAGTTCTCATAAAAAC
TGCCTGTGGTGAAAAGGAATTTAATGAGCTAGCACTTTCTGTGGTATGCATTTTTATACTTATTGTTCCT
CTGTGCTTAATTCTTGCTTCTTATGTTAATATTGGATGTGCAGTACTTAGAATTAAATCTTCTGAAGGAA
GGAGGAAAGCCTTTGGGACATGTTCTTCCCATCTCATTGTAGTTTCCTTATTTTATGGTCCAGGTATTAG
CATGTACCTTCAGCCTTCTTCATCTATCACAAGGGACCAACCCAAGTTCATGGCTCTGTTTTATGCGGTG
ATAACTCCTACATTGAATCCCTTCATCTATACCCTAAGAAACAAGGATGTAAAGGGTGCCTTTAAAAAGC
TCCTGAGAAGCATTTTCAGTTCAAAGTGA

Translation (312 aa):
MAVTNESHPKEFILLGFANHPWLELPLFVTLLITYPMALMGNIAIILVSTLDPRLYSPMYFFLKNLSFLD
MCYTTSIVPQMLFNLGSSRKTITYIGCVVQLYVFHIMGGTECLLLAIMSFDRYVAICKPLHYTLIMNQRV
CILSVSIMWLTGVIFGFSEATLTLQLPLCGTNKLDHLLCEIPVLIKTACGEKEFNELALSVVCIFILIVP
LCLILASYVNIGCAVLRIKSSEGRRKAFGTCSSHLIVVSLFYGPGISMYLQPSSSITRDQPKFMALFYAV
ITPTLNPFIYTLRNKDVKGAFKKLLRSIFSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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