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Report for CCDS28792.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28792.2 Public Mus musculus 17 Adgrf2 23 108 98 CCDS HistoryNCBI Gene:435529Re-query CCDS DB by CCDS ID:28792.2Re-query CCDS DB by GeneID:435529See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28792.2
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data. The update adds a predicted signal peptide to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28792.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113614.2 ENSMUSP00000109244.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113614.2Link to Ensembl Protein Viewer:ENSMUSP00000109244.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113614Re-query CCDS DB by Protein ID:ENSMUSP00000109244
Original member Current member NCBI NM_001033493.2 NP_001028665.2 Accepted alive Link to Nucleotide Sequence:NM_001033493.2Link to Protein Sequence:NP_001028665.2Re-query CCDS DB by Nucleotide ID:NM_001033493Re-query CCDS DB by Protein ID:NP_001028665Link to BLAST:NP_001028665.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028665.2 644 E9Q4J9 644 100% 0 0

Chromosomal Locations for CCDS 28792.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42709997 42711421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42713069 42713308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42714322 42714476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42715174 42715216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42719495 42719566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1935 nt):
ATGATTCCTGCCCATTGGTTGTACTGTTTGATGCTTCTTTTGCCTATAGAATCCTGTAGGATATTATGCC
AGGCCTCCAGCAAAAGCAAGGAGAAGGTGACATCCAGACCACATGATGTCTGTGATGGTGTCTGTAATAA
CAATGGCACCCCCTGCTTTCAGTCTTGTCCTCCAGACAGTGAGGGCAACATGAAATTTGCCTGTAAGGCC
AAGAAATGGCACAAAGTCACTGAAACCTGCCACACTCTCAATACCCACAGCATCTTTGAGGAGGATAAGG
AACTATATTCAGTTCAATCATCTGATTCAACCATACGTACACACATGTTTCATAGAGAACTTAAAACCAT
AATGGATACGTTGATGGAAAAGTGTCCAAAGGATTTGTCTTGTGTGATCAAAGGCATTGAGAGATCTCCT
CGGATGCCAGGGAACATTGCTGTGGTGGTGCAGCTCTTACACAACATCTCAACAACTCTAACCAAAGACG
TCAATGAGGAAAAGATGCAGAGTTACAGTGCCATGGCTAACCACATTCTTAACAGTAAAAGCATATCAAA
TTGGACCTTCATCCAAGACAGAAACAGCAGCTGTGTCTTGCTTCAATCAATCCATTCATTTGCAAGCAAG
CTATTTATGAAGGAACATCTCATCAACATATCACATGTCTTTATTCATACCTTGGGGACGGTCGTGTCCA
GGGGCAGCCTTGGGAAGAATTTCACGTTCTCAATGCGAATTAATGAGACAAGTGATAAGGTCACTGGGAG
GCTACTGCTCAGCCCTGAAGAGCTTCAGAAGGTGCCTTCTGCTTTCCAGGTCATCAGCATTGCTTTCCCA
ACTCTTGGGGCCATCCTGGAGGCCAGTCTTTTGGAAAATGTGACTGTGAATGGGCTCGTCCTGTCTGTCA
TTTTGCCCGAGGAGCTTAAAAACATCTCACTGATATTTGAAAAGATCAGAAAATCTGGAGAGAGGAAGTC
CCAGTGTGTGGGATGGCACTCCTTGGAGAGCAGATGGGACTGGAGGGCTTGTAAAACGATTCAAGAAAAC
TCCAGGCAAGCTGTTTGCCGTTGTCGGCCGAATAAGTTATATACTTCTTTCTCCATTCTAATGTCTCCCA
ACACGTTGGAAAGCCCTGTTCTAACTTATATTACATACATAGGCCTGGGCATTTCCATCTGCAGCTTGAT
CATCTGCCTGGCCATTGAGGTCTTAGTCTGGAGTCAAGTGACAAAGACAGAGATCTCATATTTACGTCAC
CTGTGCATCGCTAACATTGCGGCCACCTTGCTGATGGCTGATGCGTGGTTCATCGTGGCGTCTTTCCTCA
GTGGCCCAGTACTACACCACAATGGATGTGTGGCCGCCACGTTTTTTGTTCACTTCTTTTACCTGTCCGT
GTTTTTCTGGATGCTTGCCAAGGCTCTCCTTATCCTCTATGGAATTCTCATTGTGTTTCATACACTGCCC
AAGTCGTGCCTGGTGGCCTCTCTGTTTTCCGTGGGCTATGGGTGCCCTTTGGTCATCGCCATTATCACAC
TTGCCGTTACAGAGCCTGGAAAAGGCTACCTCCGGCCCGAGGCCTGCTGGCTTAATTGGGACATGACCAA
GGCTCTCCTGGCCTTTGTAGTACCAGCTCTGGCCATTGTTGTAGTAAACCTGATTACAGTCACAATGGTC
ATCATCAAGACCCAGAGAGCTGCCATCGGTAGTTCCATGTTCCAGGAAGTAAGAGCCATCGTGAGGATCT
GTAAGAACATTGCCATCCTCACACCACTGCTGGGGCTGACCTGGGGATTTGGGATAGCCACAGTCATTAA
TGGTCACTCCCTGGCCTTCCACATTATCTTCTCCTTACTCAATGCACTCCAGGTAAGTCCGGATGCTGCA
GTAGACTCTGAATTGAGAGAGTGTGTGCATCGGTTTTGTGGGTAG

Translation (644 aa):
MIPAHWLYCLMLLLPIESCRILCQASSKSKEKVTSRPHDVCDGVCNNNGTPCFQSCPPDSEGNMKFACKA
KKWHKVTETCHTLNTHSIFEEDKELYSVQSSDSTIRTHMFHRELKTIMDTLMEKCPKDLSCVIKGIERSP
RMPGNIAVVVQLLHNISTTLTKDVNEEKMQSYSAMANHILNSKSISNWTFIQDRNSSCVLLQSIHSFASK
LFMKEHLINISHVFIHTLGTVVSRGSLGKNFTFSMRINETSDKVTGRLLLSPEELQKVPSAFQVISIAFP
TLGAILEASLLENVTVNGLVLSVILPEELKNISLIFEKIRKSGERKSQCVGWHSLESRWDWRACKTIQEN
SRQAVCRCRPNKLYTSFSILMSPNTLESPVLTYITYIGLGISICSLIICLAIEVLVWSQVTKTEISYLRH
LCIANIAATLLMADAWFIVASFLSGPVLHHNGCVAATFFVHFFYLSVFFWMLAKALLILYGILIVFHTLP
KSCLVASLFSVGYGCPLVIAIITLAVTEPGKGYLRPEACWLNWDMTKALLAFVVPALAIVVVNLITVTMV
IIKTQRAAIGSSMFQEVRAIVRICKNIAILTPLLGLTWGFGIATVINGHSLAFHIIFSLLNALQVSPDAA
VDSELRECVHRFCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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