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Report for CCDS28797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28797.1 Public Mus musculus 17 Tdrd6 23 108 98 CCDS HistoryNCBI Gene:210510Re-query CCDS DB by CCDS ID:28797.1Re-query CCDS DB by GeneID:210510See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28797.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168073.8 ENSMUSP00000131277.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168073.8Link to Ensembl Protein Viewer:ENSMUSP00000131277.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168073Re-query CCDS DB by Protein ID:ENSMUSP00000131277
Original member Current member NCBI NM_198418.2 NP_940810.2 Accepted alive Link to Nucleotide Sequence:NM_198418.2Link to Protein Sequence:NP_940810.2Re-query CCDS DB by Nucleotide ID:NM_198418Re-query CCDS DB by Protein ID:NP_940810Link to BLAST:NP_940810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940810.2 2134 P61407 2134 99.5783% 0 9

Chromosomal Locations for CCDS 28797.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 43615845 43615921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43617170 43617233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43620427 43620516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43622130 43622254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43624107 43630155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6405 nt):
ATGAGTTCGACTCCGGGGCTGCCCACTCCCGGGGCCTCGCTGGCCCTGCGGGTGTCCTTCGTGGACGTGC
ATCCCGAGGTGATCCCAGTGCAGCTGTGGGGACTGGTGGGTCAGCGGCGGGAGGAGTACGTGCGGCTGAG
CCGGGAGATCCAGGAGGCAGCAGCCACGCGCGGTCCCTGGGCGCTGGGTGGGGCGTCGGCATCGCCGGGA
GAGCTGTGCCTGGTGCAGGTGGGGCTCATGTGGCACCGCTGCCGCGTGGTCAGCCGCCAGGCGCAAGACA
GCCGCGTCTTCCTGCTGGATGAGGGCCGCACCATCACGGCGGGCGCGGGCTCGCTGGCGCCAGGGCGTAG
CGAGTTCTTCCACCTGCCCTCCGAGGTGCTGGGCTGTGTGCTAGCAGGGCTGGTGCCCGCGGGCGGTGGT
GGCACTGGCGGTGGCGAACCCCAGCAATGGTCCCCCAGGGCTGTGGATTTCCTTAGCAACCTGCAGGGCA
AGGAGGTGCACGGACGGGTCCTGGATGTGTTGCTCCTCCATCGCCTGGTGCTGCTGGAGGTGCCAGTTGT
GTCTCAGCAGATGGAGGAGCTGGGTCTGGCCCGGCAAGTGCCGGACAGCCTCTTCTGTTCGCTGCTCAAA
CGCTACCTGACTGCGGCAGGGCAGGGCAGCTCCGGAGCTCCAGTTCTCCCGCGAGCCGCGCCCAAACAAG
AGCATCCTGGGTTGGATTACTTTTATCCCCAACTGCAGCTGGGAGTGACGGAGCCGGTGGTAGTAACCCA
AGTATGCCATCCCCACCGAATTCACTGTCAACTGCGGAGCCTCTCGCAGGAGATCCACCGTCTCTCTGAG
AGCATGGCCCAGGTATACCGGGCGCCTGTGGGGACAGATGATGAGGACTCTGGCAGTGCCACCTGGGAGG
AGAGGGAGGAGAGCCCTGACAAACCGGGATCTCCATGTGCTTCCTGTGGCTTGGACGGACAGTGGTACCG
GGCTCTCTTGCTTGAGACCTTCAGGCCTCAGCGCTGTGCTCAGGTGCTTCACGTCGATTACGGAAGGAAA
GAACTAGTAAGCTGCAGCAGCCTCCGCTATCTGCTGCCGGAGTATTTTCGAATGCCTGTGGTGACCTACC
CTTGTGCGTTGTACGGACTCTGGGACTGCGGGAGAGGCTGGTCCCGGTCCCAAGTAGGTGATCTGAAAGC
TCTGATCCTGGGCCAGGCAGTGAATGCGAAGATTGAATTTTACTGTTCCTTTGAGCATATGTATTATGTC
ACCCTGTATGGGGAAGATGGGATTAATCTCAACAGTGCATTCGGAGTACAATCCTGTTGCCTGGCTGACT
GGTTTCTTCAGAGCCAGGGGATAGAGGAGGAAGAGGAGGAAGATGAGGACGAAGTGGAGGCAGCGTTTCA
GTCTCAGTCCCCCGCTGAGGAAATGGAGGCGGAAGTTTCCCTCCCCTCCTTGAGATCCATCAGGCTGAAG
ATGAACACCTTCTATGACGCCCAGGTGGAGTTCGTGAAGAGCCCTTCGGAGTTCTGGATTCGCCTTAGAA
AGCACAAGAACACCTTCAGCAAGCTGACGAAGAGAATGTGCAGTTTCTATTCTTCTGCCAGTAAGCTGGA
TGGGGTTATTTTGAGACCAGAACCGGATGACCTTTGCTGTGTAAAATGGAAAGAAAATGGCTATTACCGA
GCCACGGTCACCCGATTAGACAGCAAGAGTGTGGATGTGTTCCTGGTGGACCGGGGCAACTCTGAGAATG
TGGACTGGTGTGATGTGAGAATGTTGTTGCCTCAGTTTAGACAGCTACCGATACTGGCTCTGAAGTGCAC
CCTGGCTGACATCTGGCCTCTGGGGAAAACTTGGAGCCAGGAAGCCACCTCATTTTTTAAAAAGACGGTA
CTCCACAAAGAATTGGTGGTCCATGTTCTTGATAAGCAGGATCACCAATATGTCATAGAGATCCTGGATG
AATCCAGAATGGGGGAGGAAAACATTAGTAAGGTCATCGCTCAAGCTGGCTTTGCCAAGTTCCAGGAGTT
TGAAACCAAAGAAAACATCAGACTCAGTGCCCATTCCCCTGGGCATGTTTCTGGTCATTTTATGGCGGAG
CCTAGCAAAATAACTTCTGCCAAGAAGGCCGAAGGAGACCAGAGAGCCAAAAAAGATAATAAAACCCTCT
CTGTTTCAGAAGCTTTGGCGGACACGGTCAGCCTTTCAAACCTTTCTACTGCACAGGACACAGAGAAGGT
AACGTCGGACCCATCTCTCCTCATGCTGAACTTCTTGAAAACCAAACCAGACTGCTGTGGTAAAGGGGAA
CTGGAGGTGGGCAGCACCGTTGAAGTCAAGGTGTCTCACATCGAAAACCCTGGCTCCTTCTGGTGTCAGC
TGATGAGGAACGCGCAAGGCTTCAGAACCTTGATGTGTGACATCGAGGACTATTGCAAAAGCAGCGAGCC
ATCTCCCTACGAGGGGGACACTCGTGTTTGTCTGGCAAAGCGAACAGCAAGCGGGAGATGGTCCAGAGCT
CTGATTAGCGGGGCACACTCGTTAGAGCATGTTAGAGTGGTGTTCGTGGATTATGGAGACAGGGACGTGG
TATCTACGAAGGACATACTCTCCGTCAGTGATGTGTTCTTCCAGGTTAGAGCTCAGGCCTTCCGGTGCAG
TCTTTATAATTTAATTCAACCGATGGGTGAAAATCCCTTTGTCTGGGATGAAAAGGCAGTACAGGCTTTC
AGCGGGTTCATCGATAGCGCTCGGCAGAATAACTTAGAATTAAAATGCACAGTGTTTGCTTTGGCATCAA
GGCATGAGGAAGAGTGGTTCAATGTTGTGGACTTGCTGACGCCCTTTCAGAGCGCCTGCCGTTTTTTGGT
AGAAAAGAGACTTGCGAGGCCTGTCAAACATCAGAAGCCCCTGGAACCTTCCGTTCAGCTACACTCTTAC
TACTATTCCACCCATGACCTAAAAATCGGAAGTGAAGAACTGGTGTACGTAACCCATGCCGACGACCCCT
GGACATTTTATTGCCAGCTCGCGAGAAATACAAACGTTTTAGAACAACTGTCGTACAACATCATGCAGCT
AAGTAAAGCCTTACTGAATCTAAAAGCATCCACCTTGGCCCCTGGAACCTTGTGCCTTGCCAGATATACC
GACGGAAACTGGTATAGAGGAATAATAATAGAGAAAGAGCCAAGTAAGGTCTTTTTTGTTGATTTTGGGA
ACACGTACATAGCAGTCGATCATCTGCTCCCCATCCCCCGAGATGCCCATGATGTCTTACTTCTGCCCAT
GCAAGCCTTGAAATGCTCCTTATCGGACATCCCTCATCACATCCCGGAAGAAGTCACGGCATGGTTTCAG
GAAACTGTTTTAGATAAGTCACTGAAGGCTTTAGTTGTAGCCAAAGACCCAGATGGGAGACTGATTATAG
AGCTGTATGACGACAGTGTCCAAATCAATGCCAGTATCAACGAGAAGCTCGGGCTCCTTGGTTACAAAAA
CAGAACCAGGAGAAAAGAGAAAGAGAATGAAATAATACTCTACGAGACCAAAGCTCTTGAAGATAAAAAG
GAGAGCGTGAAGCCATCACTTGCAGACTATCTGAGTAAACCGGGAGAGAGTAAAGCACACAGTGTAGAGA
TTATGGGTGAATCTTGCAAACCCAAGATGGGTCCAGCATGTAAGGAGCTCAGATATTTACAGGGCTCAGC
AAAGGCCAACCTAGTCCCACCGTATCAGGACTCAGTGGGCAACAAAAATGATGGAGGGTTTCCATTAACA
AGGGAGAAGAAAGAAGACATATTTGCCAGCTCACCCATGAGTGGCACCAAACTAGACTCTGCTCTTCCTG
AGAGAAGAATGGGAGAACCTAGCGGCAGAGATCTGCCTCCCAAGTTTTGTGAATTCCCACAAAAGACAAT
AGCTCCTGGCTTTAAGACCTCTGTGTATGTTTCTCATATTAACGACCTTTCAGATTTTTACATCCAGCTG
ATAGAAGATGAAGCTGAGATCAACAACCTCTCAGAGAGACTAAATGATGTCAGAACACGGCCCCAGTACC
ACACAGGTCCGCAGTGGCAGAGCGGAGATGTGATATGTGCCGTTTTCCCAGAGGATAACTTATGGTACCG
AGCGCTTGTCATGGAACAGCAGCCCAATGGCCTTCTCTCTGTCCAGTTTATCGATTATGGCAACATGTCT
GTGGTTCACACTAACAGAACCGGTCGGCTTGGCCCTGTTGACGCGGTGTTACCTGCACTGTGCCTCCATT
GCTCCCTATGGGGGCTTTCGGTACCTGTGTGTAAGGAAATGGTAAGCTACTTTTCCCAGAGGACAGACGA
GGCTCAGATAAGATGTGAATTTGTTAAATTCCAAGGCACCTGGGAAGTGATCCTCGCAGATGAGCACGGA
GTCATAGCTGAAGATATGATTAGCAGGTTTCCATGCAATGGAAACTCTCAAGCAGGGCTTACCACCCAGA
CCATGAAAGGGGACTGTTTGAAGATAGCTAACAAACCCAACGCTGATACCTCAGTGCTTCTTAACTGGTA
TAACCCCAAAGCAAAACTGATAAAAGCCTACGCTACCGTGATAGACGGGCCTGAGTACTTTTGGTGTCAG
TTTGCCGATTCCGAGAAGCTGCAGTATCTGGAAACGGAGGTTCAAAGTGCTGGCAAGCAGCTCTCTGACA
GAAGAAGCTGCACCCAATGTCCACAAATTGGAGATCCGTGCATCGTGAGGTACAGAGAAGACGGGCATTA
CTACAGAGCCCTCATCACTAACATCTGTGATGGTGAGCTTGCGTCGGTCAGGCTTGTGGACTTTGGGAAT
GCGGAGGACTGTGTGGACGCCAAGGAGCTTTGGAGCATCCCTTCTGAGCTTCTGCTGGTCCCCATGCAAG
CATTTCCATGCTGCCTCGCTGGATTCTCAGTCTCTGGCGGTGTGTGCCCTCAAGAAGGGAATGATTATTT
TTATGACATAGTCACAGAGGACGTGTTGGACATAACGATCTTGGAGATTAAAAGAGACGTTTGCAACATC
CCCTTAGCCATCGTGGAGCTAAGGAGCAAAGGCGAGAACATTAACGAGAAGATGAAGAAGTATGCTAAGA
CGGGCGTGCCCAAGAATGACCTGTCCTCTGAGAAGCGTGGCCCAGAGAGAAAGGGAAGCCTCGCCAGTCC
TGACCTTGGCCTCAAGAAGCCAAGTCATAAAATAGCACAAGATAAGACATTCTACGGGGAAGCCCGGGCA
AGCGAGCTCTCGGAGAGACTTGAAAAGGATTTAAACATTGAAACCAAGACAAGTAAATTCTATGAACGCA
GCACCCGTAGCATCTTCAACGCTTTCGAGAACTCATGCAAAGGTAAAATGGGTTCTGAGAGGCTAGAAGG
TAGCATGGATTACCACTTCGTGGACAGAGCCAAGTTTGATAATAACTACCTTATCACGGGATTTAACCCG
ATATTGGCCCATGCTAGTGAGCCAAAGGAGTTACTGGAACTGAGTTCACTAGAGGTACCACTCTCTGCTG
ACAATGACGATGAATGCAAAGAATTCTTAGAACTGGAATCCATTGAGTTACAGCACTCCCCTGTTGGGGA
GGAAGAGAAAGAGGAGCTAGGCCTGGGGTCTCCAATGGCACCGCTGTCTCCAGGCTGCCAGGCAGGAGCC
ACCCTGGAGTCATTCATGATGCAACTTCCCCTGGACTGTGAGGCTGAGAAGCAGCTGGAACTGAAGCTGC
CCACACCCCAGCTGTCTTTGGAGGACAGCATAAGCCCTTTATCTGCAGCTGTCAGCCAGGACATCCAGGA
ATCCAGGTATTCGGAGGATGAGAGAAAGGCCGGCTACATGGGCTCTTCTGATGATGACCACAGCAGGTCT
CCCCTCCTCCAACACGGGAAGGGTGGCAATTCACCGGCACACGGTGGAAGGAACCTGTCTGAAGAGGAGT
TTCCGCAGTTTGAAAGTAGAGACAGCGCCGCCTTATTGGCACCCTTGTTCTCTGAGGAAGAAGCCAGAGA
AGGAAGGAAGTGCGGGAGCATGGTACCAGCTCAGCTACAGAGCACCTACACTCTGAAAGGCTTCTCTGTC
GGATCGAAATGCGTCGTGTGGTCGAGCCTAAGAAACACATGGTCTAAGTGTGAGATTCTCGAACTAGCCG
AAGAAGGAACAAGGGTTTTGAACCTTTCAAATGGTGTGGAGGAGACAGTAAGCCCCGAGAATGTCTGGAA
TGGGATTCCCAAGGTAGATAAGAGACCTTCTGAGGCTGTATTCCAAACAGTGGGAAAGGACCTTCCCTTC
ATGCCATCGGATGACGCCACCACCAAAGGTTTTTCTTCTGTTTCAGAGGAGGAGGCGTGTGGAGGTGATG
CAGATTCTCTGAGCACGGCCAAGCTGAACATATAG

Translation (2134 aa):
MSSTPGLPTPGASLALRVSFVDVHPEVIPVQLWGLVGQRREEYVRLSREIQEAAATRGPWALGGASASPG
ELCLVQVGLMWHRCRVVSRQAQDSRVFLLDEGRTITAGAGSLAPGRSEFFHLPSEVLGCVLAGLVPAGGG
GTGGGEPQQWSPRAVDFLSNLQGKEVHGRVLDVLLLHRLVLLEVPVVSQQMEELGLARQVPDSLFCSLLK
RYLTAAGQGSSGAPVLPRAAPKQEHPGLDYFYPQLQLGVTEPVVVTQVCHPHRIHCQLRSLSQEIHRLSE
SMAQVYRAPVGTDDEDSGSATWEEREESPDKPGSPCASCGLDGQWYRALLLETFRPQRCAQVLHVDYGRK
ELVSCSSLRYLLPEYFRMPVVTYPCALYGLWDCGRGWSRSQVGDLKALILGQAVNAKIEFYCSFEHMYYV
TLYGEDGINLNSAFGVQSCCLADWFLQSQGIEEEEEEDEDEVEAAFQSQSPAEEMEAEVSLPSLRSIRLK
MNTFYDAQVEFVKSPSEFWIRLRKHKNTFSKLTKRMCSFYSSASKLDGVILRPEPDDLCCVKWKENGYYR
ATVTRLDSKSVDVFLVDRGNSENVDWCDVRMLLPQFRQLPILALKCTLADIWPLGKTWSQEATSFFKKTV
LHKELVVHVLDKQDHQYVIEILDESRMGEENISKVIAQAGFAKFQEFETKENIRLSAHSPGHVSGHFMAE
PSKITSAKKAEGDQRAKKDNKTLSVSEALADTVSLSNLSTAQDTEKVTSDPSLLMLNFLKTKPDCCGKGE
LEVGSTVEVKVSHIENPGSFWCQLMRNAQGFRTLMCDIEDYCKSSEPSPYEGDTRVCLAKRTASGRWSRA
LISGAHSLEHVRVVFVDYGDRDVVSTKDILSVSDVFFQVRAQAFRCSLYNLIQPMGENPFVWDEKAVQAF
SGFIDSARQNNLELKCTVFALASRHEEEWFNVVDLLTPFQSACRFLVEKRLARPVKHQKPLEPSVQLHSY
YYSTHDLKIGSEELVYVTHADDPWTFYCQLARNTNVLEQLSYNIMQLSKALLNLKASTLAPGTLCLARYT
DGNWYRGIIIEKEPSKVFFVDFGNTYIAVDHLLPIPRDAHDVLLLPMQALKCSLSDIPHHIPEEVTAWFQ
ETVLDKSLKALVVAKDPDGRLIIELYDDSVQINASINEKLGLLGYKNRTRRKEKENEIILYETKALEDKK
ESVKPSLADYLSKPGESKAHSVEIMGESCKPKMGPACKELRYLQGSAKANLVPPYQDSVGNKNDGGFPLT
REKKEDIFASSPMSGTKLDSALPERRMGEPSGRDLPPKFCEFPQKTIAPGFKTSVYVSHINDLSDFYIQL
IEDEAEINNLSERLNDVRTRPQYHTGPQWQSGDVICAVFPEDNLWYRALVMEQQPNGLLSVQFIDYGNMS
VVHTNRTGRLGPVDAVLPALCLHCSLWGLSVPVCKEMVSYFSQRTDEAQIRCEFVKFQGTWEVILADEHG
VIAEDMISRFPCNGNSQAGLTTQTMKGDCLKIANKPNADTSVLLNWYNPKAKLIKAYATVIDGPEYFWCQ
FADSEKLQYLETEVQSAGKQLSDRRSCTQCPQIGDPCIVRYREDGHYYRALITNICDGELASVRLVDFGN
AEDCVDAKELWSIPSELLLVPMQAFPCCLAGFSVSGGVCPQEGNDYFYDIVTEDVLDITILEIKRDVCNI
PLAIVELRSKGENINEKMKKYAKTGVPKNDLSSEKRGPERKGSLASPDLGLKKPSHKIAQDKTFYGEARA
SELSERLEKDLNIETKTSKFYERSTRSIFNAFENSCKGKMGSERLEGSMDYHFVDRAKFDNNYLITGFNP
ILAHASEPKELLELSSLEVPLSADNDDECKEFLELESIELQHSPVGEEEKEELGLGSPMAPLSPGCQAGA
TLESFMMQLPLDCEAEKQLELKLPTPQLSLEDSISPLSAAVSQDIQESRYSEDERKAGYMGSSDDDHSRS
PLLQHGKGGNSPAHGGRNLSEEEFPQFESRDSAALLAPLFSEEEAREGRKCGSMVPAQLQSTYTLKGFSV
GSKCVVWSSLRNTWSKCEILELAEEGTRVLNLSNGVEETVSPENVWNGIPKVDKRPSEAVFQTVGKDLPF
MPSDDATTKGFSSVSEEEACGGDADSLSTAKLNI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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