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Report for CCDS28811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28811.1 Public Mus musculus 17 Nfkbie 23 108 98 CCDS HistoryNCBI Gene:18037Re-query CCDS DB by CCDS ID:28811.1Re-query CCDS DB by GeneID:18037See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024742.8 ENSMUSP00000024742.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024742.8Link to Ensembl Protein Viewer:ENSMUSP00000024742.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024742Re-query CCDS DB by Protein ID:ENSMUSP00000024742
Original member Current member NCBI NM_008690.4 NP_032716.2 Accepted alive Link to Nucleotide Sequence:NM_008690.4Link to Protein Sequence:NP_032716.2Re-query CCDS DB by Nucleotide ID:NM_008690Re-query CCDS DB by Protein ID:NP_032716Link to BLAST:NP_032716.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032716.2 364 O54910 364 100% 0 0

Chromosomal Locations for CCDS 28811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45555941 45556314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45558495 45558597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45559208 45559430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45560124 45560212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45560408 45560647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45562002 45562067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGTCGGATGCGCGGAAGGGGCCGGACGAGGCGGATGATAGCCAGTGTGACTCTGGCATAGAGTCGCTGC
GCTCTCTACGCTCCCTGCCTGAACCTACTGCGGCCCCAGGCTCCGGATCATCCCAAAGCGGCTGCCCACA
GCCTTGGAGACATGCTCCGGAGACCCACAAGGAACCAGAGAAAGAAGATGCGGATGGAGAGCGAGCGGAC
TCCACTTATGCCTCCTCCTCTCTCACTGAATCCTTCCCCTTACTGGAGAGACCCGAAGCCAAGGATCCAA
GCCCTCCCGCCCCAGGATCGCCGCTGCCCCCCGCGGGGGTGCTGAGCCCTCAGCAACTCGAGGCGCTCAC
ATACATCTCTGAGGATGGAGACACGCTGCTCCACCTGGCAGTGATTCACGAAGCCCCGTCGGTGCTATTC
TGTTGCTTGGCTTTCCTGCCCCAGGAAGTCCTGGACATTCAGAACAACCTTTACCAGACAGCACTGCATC
TGGCCGTTCACCTGGATCAGCCAGATGTTGTCCGGGCGCTGGTGCTGAAGGGGGCCAGCCGAATTCTGCA
GGATCAGCATGGTGACACGGCCCTGCATGTGGCCTGTCGGCGCCAGAATCTGGCCTGCGCGTGCTGTCTG
CTGGAGGAGCAGCCAGAGCCAGGCAGACAGCTTTCTCATCCCCTGGACCTCCAACTGAAGAACTGGCAAG
GTCTGGCCTGTCTCCACATTGCCACATTGCAGAGGAACCAACCGCTCATAGAACTGTTGCTTCAGAATGG
AGCTGACATTGATGTACAGGAGGGCACGAGTGGAAAGACTGCCCTGCACCTGGCTGTGGAAACCCAGGAG
CGCAGCCTGGTGCAGTTTCTGCTCCAGGCCGGTGCCCGGGTAGATGCCCGCATGCTTAACGGGTGCACAC
CTTTACACCTGGCAGCTGGCCGGGGCCTCAACAGCATCTCATCCACTCTGTGTGAGGCCGGTGCCGACTC
TCTGCTGCTGAATGTAGAAGATGAGACACCCCAGGACCTGGCTGAGGACCTCCTTTCTTATTTGCCCTTC
GATGACCTGAAAATCTCCGGCAAACCACTGCTATGTACTGACTGA

Translation (364 aa):
MSDARKGPDEADDSQCDSGIESLRSLRSLPEPTAAPGSGSSQSGCPQPWRHAPETHKEPEKEDADGERAD
STYASSSLTESFPLLERPEAKDPSPPAPGSPLPPAGVLSPQQLEALTYISEDGDTLLHLAVIHEAPSVLF
CCLAFLPQEVLDIQNNLYQTALHLAVHLDQPDVVRALVLKGASRILQDQHGDTALHVACRRQNLACACCL
LEEQPEPGRQLSHPLDLQLKNWQGLACLHIATLQRNQPLIELLLQNGADIDVQEGTSGKTALHLAVETQE
RSLVQFLLQAGARVDARMLNGCTPLHLAAGRGLNSISSTLCEAGADSLLLNVEDETPQDLAEDLLSYLPF
DDLKISGKPLLCTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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