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Report for CCDS28823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28823.1 Public Mus musculus 17 Yipf3 23 108 98 CCDS HistoryNCBI Gene:28064Re-query CCDS DB by CCDS ID:28823.1Re-query CCDS DB by GeneID:28064See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095263.9 ENSMUSP00000092897.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095263.9Link to Ensembl Protein Viewer:ENSMUSP00000092897.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095263Re-query CCDS DB by Protein ID:ENSMUSP00000092897
Original member NCBI NM_145353.2 NP_663328.2 Updated not alive Link to Nucleotide Sequence:NM_145353.2Link to Protein Sequence:NP_663328.2Re-query CCDS DB by Nucleotide ID:NM_145353Re-query CCDS DB by Protein ID:NP_663328
Current member NCBI NM_145353.3 NP_663328.2 Accepted alive Link to Nucleotide Sequence:NM_145353.3Link to Protein Sequence:NP_663328.2Re-query CCDS DB by Nucleotide ID:NM_145353Re-query CCDS DB by Protein ID:NP_663328Link to BLAST:NP_663328.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663328.2 347 Q3UDR8 347 100% 0 0

Chromosomal Locations for CCDS 28823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46248248 46248328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46248841 46249038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46249179 46249285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46250411 46250456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46250570 46250662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46250794 46250925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46251114 46251227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46251364 46251487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46251566 46251714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGCGACTCCGGCGGCGCCGGCCAGCGGCGTCCGAAATGGTGCTGGCCCGGAATGGGGAGGCTTCGAAG
AAAACATCCAGGGTGGGGGTTCGGCTGTGATTGATATGGAGAACATGGACGATACCTCAGGCTCCAGCTT
CGAGGACATGGGTGAGCTGCACCAGCGCCTGCGGGAGGAAGAAGTAGATGCTGATGCAGCTGCTGCAGAA
GAAGAGGATGGGGAGTTTCTTGGCATGAAAGGCTTTAAAGGACAACTGAGCCGGCAGGTAGCAGATCAGA
TGTGGCAGGCAGGGAAGAGACAGGCTTCCAGGGCCTTCAGCTTGTATGCCAACATTGACATCCTCAGACC
CTACTTTGATGTGGAGCCTGCCCAGGTCCGAAGCAGGCTCCTGGAGTCCATGATCCCTATCAAGATGGTC
AACTTCCCCCAGAAAGTCGCGGGCGAGCTCTACGGACCGCTCATGCTGGTCTTCACACTGGTGGCCATCC
TCCTGCATGGAATGAAGACTTCTGACACCATTATCCGGGAGGGCACCCTCATGGGCACAGCCATAGGCAC
CTGCTTTGGATACTGGCTGGGTGTCTCGTCCTTCATTTATTTCCTTGCCTACCTGTGTAACGCCCAGATC
ACCATGCTACAGATGTTGGCACTGCTGGGCTACGGCCTCTTCGGGCACTGCATAGTCCTGTTCATCACCT
ATAACATCCACCTTCATGCCCTCTTCTACCTCTTCTGGCTGCTGGTGGGTGGGCTCTCTACCCTGCGCAT
GGTGGCAGTGTTGGTGTCGCGGACTGTGGGCCCTACTCAGCGGCTGCTGCTCTGTGGCACGCTGGCTGCC
CTGCACATGCTCTTCCTGCTCTATCTGCACTTCGCCTACCACAAAGTGGTGGAGGGGATCCTGGACACCC
TGGAGGGCCCCAACATCCCACCCATGCAGAGGGTCCCCAGAGACATCCCCGCTGTGCTCCCTGCTGCCAG
GCTGCCCGTCGCTGTGATCAATGCTACCGCCAAGGCAATAGCAGTGACTCTGCAGTCACATTGA

Translation (347 aa):
MATPAAPASGVRNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREEEVDADAAAAE
EEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVEPAQVRSRLLESMIPIKMV
NFPQKVAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQI
TMLQMLALLGYGLFGHCIVLFITYNIHLHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAA
LHMLFLLYLHFAYHKVVEGILDTLEGPNIPPMQRVPRDIPAVLPAARLPVAVINATAKAIAVTLQSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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