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Report for CCDS28831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28831.1 Public Mus musculus 17 Srf 23 108 98 CCDS HistoryNCBI Gene:20807Re-query CCDS DB by CCDS ID:28831.1Re-query CCDS DB by GeneID:20807See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28831.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015749.6 ENSMUSP00000015749.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015749.6Link to Ensembl Protein Viewer:ENSMUSP00000015749.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000015749Re-query CCDS DB by Protein ID:ENSMUSP00000015749
Original member Current member NCBI NM_020493.2 NP_065239.1 Accepted alive Link to Nucleotide Sequence:NM_020493.2Link to Protein Sequence:NP_065239.1Re-query CCDS DB by Nucleotide ID:NM_020493Re-query CCDS DB by Protein ID:NP_065239Link to BLAST:NP_065239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065239.1 504 Q9JM73 504 100% 0 0

Chromosomal Locations for CCDS 28831.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46549083 46549178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46549436 46549512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46549845 46550036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46550901 46551020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46551531 46551792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46553560 46553826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46555328 46555828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGTTACCGAGCCAAGCTGGGGCCGCGGCGGCTCTGGGCCGGGGCTCGGCCCTGGGGGGCAACCTGAACC
GGACCCCGACGGGGCGGCCGGGCGGCGGCGGCGGGACTCGCGGGGCGAACGGGGGCCGGGTCCCCGGGAA
CGGCGCGGGGCTCGGCCAGAGTCGTCTGGAGCGGGAGGCTGCAGCGGCAGCGGCGCCCACCGCCGGGGCC
CTCTACAGCGGCAGCGAGGGCGACTCCGAGTCCGGCGAGGAGGAGGAGCTGGGCGCCGAGCGGCGCGGCC
TCAAGCGGAGCCTGAGCGAGATGGAGCTCGGCGTGGTGGTCGGTGGGCCTGAGGCGGCGGCGGCGGCCGC
CGGGGGCTACGGGCCGGTGAGCGGCGCGGTGAGCGGGGCCAAGCCGGGGAAGAAGACCCGGGGCCGCGTG
AAGATCAAGATGGAGTTCATCGACAACAAGCTGCGGCGCTACACGACCTTCAGCAAGAGGAAGACGGGCA
TCATGAAGAAGGCCTATGAGCTGTCCACGCTGACAGGGACACAGGTGCTGTTGCTGGTGGCCAGTGAGAC
AGGCCATGTGTATACCTTTGCCACCCGCAAACTGCAGCCCATGATCACCAGTGAGACCGGCAAGGCGCTG
ATTCAGACCTGCCTCAACTCGCCAGACTCTCCGCCCCGCTCAGACCCCACCACAGACCAGAGAATGAGTG
CCACTGGCTTTGAAGAGCCAGATCTCACCTACCAGGTGTCGGAATCTGACAGCAGTGGGGAAACCAAGGA
CACACTGAAGCCAGCATTCACAGTCACCAACCTGCCGGGTACCACCTCCACAATCCAGACAGCACCCAGC
ACCTCTACCACCATGCAAGTCAGCAGCGGCCCCTCCTTCCCCATCACCAACTACCTGGCACCAGTGTCTG
CTAGTGTCAGCCCCAGCGCTGTCAGCAGTGCCAACGGGACTGTGCTCAAGAGTACAGGCAGCGGCCCTGT
CTCCTCTGGGGGCCTTATGCAGCTGCCTACCAGCTTCACCCTCATGCCTGGTGGGGCAGTGGCCCAGCAG
GTCCCTGTGCAGGCCATTCATGTGCACCAGGCCCCACAGCAAGCGTCTCCCTCTCGTGACAGCAGCACAG
ACCTCACGCAGACCTCCTCCAGCGGGACAGTGACGTTGCCCGCCACCATCATGACGTCGTCTGTACCCAC
AACTGTGGGTGGCCACATGATGTACCCTAGTCCCCATGCAGTGATGTATGCCCCCACCTCAGGCCTGGCT
GATGGCAGCCTCACCGTGCTCAATGCCTTCTCTCAGGCACCATCCACCATGCAGGTGTCCCACAGCCAGG
TCCAGGAGCCAGGTGGTGTCCCTCAGGTGTTCCTGACAGCACCGTCTGGGACCGTGCAGATCCCTGTCTC
TGCAGTTCAGCTTCACCAGATGGCTGTGATAGGGCAGCAAGCTGGGAGCAGCAGCAACCTCACCGAGCTA
CAGGTGGTGAACCTGGATGCCACCCACAGCACCAAGAGTGAATGA

Translation (504 aa):
MLPSQAGAAAALGRGSALGGNLNRTPTGRPGGGGGTRGANGGRVPGNGAGLGQSRLEREAAAAAAPTAGA
LYSGSEGDSESGEEEELGAERRGLKRSLSEMELGVVVGGPEAAAAAAGGYGPVSGAVSGAKPGKKTRGRV
KIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKAL
IQTCLNSPDSPPRSDPTTDQRMSATGFEEPDLTYQVSESDSSGETKDTLKPAFTVTNLPGTTSTIQTAPS
TSTTMQVSSGPSFPITNYLAPVSASVSPSAVSSANGTVLKSTGSGPVSSGGLMQLPTSFTLMPGGAVAQQ
VPVQAIHVHQAPQQASPSRDSSTDLTQTSSSGTVTLPATIMTSSVPTTVGGHMMYPSPHAVMYAPTSGLA
DGSLTVLNAFSQAPSTMQVSHSQVQEPGGVPQVFLTAPSGTVQIPVSAVQLHQMAVIGQQAGSSSNLTEL
QVVNLDATHSTKSE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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