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Report for CCDS28843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28843.1 Public Mus musculus 17 Tbcc 23 108 98 CCDS HistoryNCBI Gene:72726Re-query CCDS DB by CCDS ID:28843.1Re-query CCDS DB by GeneID:72726See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040434.8 ENSMUSP00000048696.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040434.8Link to Ensembl Protein Viewer:ENSMUSP00000048696.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040434Re-query CCDS DB by Protein ID:ENSMUSP00000048696
Original member Current member NCBI NM_178385.3 NP_848472.2 Accepted alive Link to Nucleotide Sequence:NM_178385.3Link to Protein Sequence:NP_848472.2Re-query CCDS DB by Nucleotide ID:NM_178385Re-query CCDS DB by Protein ID:NP_848472Link to BLAST:NP_848472.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848472.2 341 Q8VCN9 341 99.7067% 0 1

Chromosomal Locations for CCDS 28843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46890690 46891715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGAGGGTGTGGACTGCTCCATGGCTCTGGCCGACGCTGCCGCTGGCTCCCCGCGGGACCTGAGCCTGG
TG
CCCGAGCGACTTCAGAGGCGCGAACAGGAGAGGCAGATAGAGGTGGAGAGACGCAAGCAGAAGCGGCA
G
GACCAGGAGGTGGAGGAGGAGAAGAGCGGCTTCTTCGCCGCCGCCTTCGCCCGGGAGCGCGCAGCGGTC
GAG
GAGCTGCTGCGGGGCGAGGCGTCGGCGGAGCGGCTGGAAGAGGCGGCCAACCGGCTCCAGGGCCTGC
GG
AAGCTCCTGAACGACTCGGTGCTCTTCCTCGCCGCCTACGACCTGCGGCAGGGCCAGGCGGCGTTGGC
G
CAGCTGCAGGCTGTCCTAACGGAACGTCGCCAGGAGTTGCAGCCCAAGAAGCGCTTCGCCTTCAAGGCA
CGG
AAGAAGGATGCTGCGGGGACCGCCCAGGTAGACGCCGCACCCGTCGCCTCGGCGGCCCCTTCTCCAC
CG
GTGACCAAGGAGGAGGAGGGAGCTCCCGGGGCCAGCTGGGCCTGTGGCTTCTCCAACCTGGAGTCCCA
A
GACCTGGAGAAGAGAGCTGAAGAGCTGCACCAGCGCGACGTCCTTTTGAGCGACCTGACCAACTGCACT
GTC
AAACTGTGTGGCAATCCCAACACCTTGCGGCTTGCGAAGGCCCGCGGCTGCAAGGTGCTCTGCGGCC
CA
GTGACCACCTCTGTGTTTCTGGAGGATTGTCGAGATTGCGTCCTGGCTGTGGCTTGCCAGCAGCTCCG
T
GTGCACACTACCAAAGACACGCGCGTCTTCTTGCAAGTGACCAGCAGGGCTATCGTGGAGGACTGCAGC
GGC
ATCCAGTTTGCCCCTTACACCTGGAGCTACCCGGGGATCGACAAGGACTTCCAGGACTCCGGTTTAG
AT
AGGAGCAAAAATAACTGGGACCAGGTTGATGATTTCAACTGGCTGGCCCGAAACGTGGCCTCCCCAAA
C
TGGAGTATTCTTCCTGAAGAGGAGAGAGACATCCAGTGGGATTGA


Translation (341 aa):
MEGVDCSMALADAAAGSPRDLSLVPERLQRREQERQIEVERRKQKRQDQEVEEEKSGFFAAAFARERAAV
E
ELLRGEASAERLEEAANRLQGLRKLLNDSVLFLAAYDLRQGQAALAQLQAVLTERRQELQPKKRFAFKA
R
KKDAAGTAQVDAAPVASAAPSPPVTKEEEGAPGASWACGFSNLESQDLEKRAEELHQRDVLLSDLTNCT
V
KLCGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCVLAVACQQLRVHTTKDTRVFLQVTSRAIVEDCS
G
IQFAPYTWSYPGIDKDFQDSGLDRSKNNWDQVDDFNWLARNVASPNWSILPEEERDIQWD




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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