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Report for CCDS28849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28849.1 Public Mus musculus 17 Cimip3 23 108 98 CCDS HistoryNCBI Gene:75462Re-query CCDS DB by CCDS ID:28849.1Re-query CCDS DB by GeneID:75462See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061885.8 ENSMUSP00000050873.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061885.8Link to Ensembl Protein Viewer:ENSMUSP00000050873.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061885Re-query CCDS DB by Protein ID:ENSMUSP00000050873
Original member Current member NCBI NM_029296.2 NP_083572.1 Accepted alive Link to Nucleotide Sequence:NM_029296.2Link to Protein Sequence:NP_083572.1Re-query CCDS DB by Nucleotide ID:NM_029296Re-query CCDS DB by Protein ID:NP_083572Link to BLAST:NP_083572.1

Chromosomal Locations for CCDS 28849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47413562 47413894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47433336 47433423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47436607 47436794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47437191 47437214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGAAGGGAGACAGGGAACGGCAGGCCGATCTGTCCCCGAGGGAAGGACCTTCCGTCCCTAGGCCTGTCC
TGCTCCAGACTGAACCCCGCAGCGTCTTCCCAGGGGACACTAGCAGGCCATGGTCCCCAGCCGCGCTCCC
CGCCCGCGCACCCGGCGACAGGTGGTGCGGGCGCCGCCGCCGCTCGCCTGGAAATGCGAGCTACCTGGAC
AGTGACATTTCTGAGAAGTCTCGTTCAGCTTCAGAGGAAGAGAAGAGCCATGCCCTCGGGGCTTGCCACT
GTGCAGAGAATGCTTTCCAGGATTCACAGAAATCCTTAGTCCCCAGCCGTGGGCAAAAGATGACATCAGG
CACAAAGGCAAAGGTGCCGCTGACGGCATTGTCCCAGAAATGGAAACGGGACCGAGAGCAGACTCTGGAG
GCAGCTTATGTACCAGTGGTGGTGGATCCTCGGGGGCAGAACCCAGACACTAGCATCAGGTTCAGTTTCT
ACAACTCACAGTATTCCAATTCTCTAAATCCCTTCTACACCCTGCAGAAGCCCACCTGTGGCTACCTGTA
CCAAAGAGAAACCGACCACACCCGAAAACGCTTTGATGTTCCTCCAGCAAACCTGATCTTGTGGCGCACC
TAG

Translation (210 aa):
MKGDRERQADLSPREGPSVPRPVLLQTEPRSVFPGDTSRPWSPAALPARAPGDRWCGRRRRSPGNASYLD
SDISEKSRSASEEEKSHALGACHCAENAFQDSQKSLVPSRGQKMTSGTKAKVPLTALSQKWKRDREQTLE
AAYVPVVVDPRGQNPDTSIRFSFYNSQYSNSLNPFYTLQKPTCGYLYQRETDHTRKRFDVPPANLILWRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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