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Report for CCDS28861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28861.1 Public Mus musculus 17 Trem3 23 108 98 CCDS HistoryNCBI Gene:58218Re-query CCDS DB by CCDS ID:28861.1Re-query CCDS DB by GeneID:58218See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048065.5 ENSMUSP00000044478.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048065.5Link to Ensembl Protein Viewer:ENSMUSP00000044478.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048065Re-query CCDS DB by Protein ID:ENSMUSP00000044478
Original member Current member NCBI NM_021407.3 NP_067382.1 Accepted alive Link to Nucleotide Sequence:NM_021407.3Link to Protein Sequence:NP_067382.1Re-query CCDS DB by Nucleotide ID:NM_021407Re-query CCDS DB by Protein ID:NP_067382Link to BLAST:NP_067382.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067382.1 183 Q9JKE1 183 100% 0 0

Chromosomal Locations for CCDS 28861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48247849 48247894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48249549 48249899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48257870 48257970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48258418 48258471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGTCACCGCTGCTGCTATGGCTGGGGCTGATGCTCTGTGTCTCGGGACTCCAAGCTGGAGATGAGGAAG
AACACAAGTGTTTTCTGGAGGGCGAGAACCTGACCCTGACTTGTCCTTACAACATCATGCTATACTCACT
GAGCCTGAAGGCCTGGCAGCGGGTCAGAAGCCACGGTTCTCCAGAGACTCTGGTGCTCACAAACACCAGA
AAGGCAGACTTCAACGTGGCCAGGGCTGGGAAGTACTTGCTGGAGGATTATCCCACCGAATCTGTCGTCA
AGGTCACGGTGACTGGGCTGCAGAGGCAAGATGTGGGGCTGTACCAGTGTGTGGTCTACCTCTCTCCTGA
CAATGTTATCATTCTGCGTCAACGGATACGGCTGGCATGGTGTCAAGGGAAGCCAGTGATGGTGATCGTT
CTGACGTGTGGCTTCATACTAAACAAGGGCCTGGTCTTCTCAGTCCTGTTTGTCTTTCTCTGCAAAGCTG
GGCCTAAGGTGTTACAGCCTTCCAAGACATCCAAAGTACAGGGAGTCTCTGAGAAACAGTAG

Translation (183 aa):
MSPLLLWLGLMLCVSGLQAGDEEEHKCFLEGENLTLTCPYNIMLYSLSLKAWQRVRSHGSPETLVLTNTR
KADFNVARAGKYLLEDYPTESVVKVTVTGLQRQDVGLYQCVVYLSPDNVIILRQRIRLAWCQGKPVMVIV
LTCGFILNKGLVFSVLFVFLCKAGPKVLQPSKTSKVQGVSEKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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