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Report for CCDS28898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28898.1 Public Mus musculus 17 Mydgf 23 108 98 CCDS HistoryNCBI Gene:28106Re-query CCDS DB by CCDS ID:28898.1Re-query CCDS DB by GeneID:28106See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019723.7 ENSMUSP00000019723.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019723.7Link to Ensembl Protein Viewer:ENSMUSP00000019723.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019723Re-query CCDS DB by Protein ID:ENSMUSP00000019723
Original member Current member NCBI NM_080837.2 NP_543027.1 Accepted alive Link to Nucleotide Sequence:NM_080837.2Link to Protein Sequence:NP_543027.1Re-query CCDS DB by Nucleotide ID:NM_080837Re-query CCDS DB by Protein ID:NP_543027Link to BLAST:NP_543027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543027.1 166 Q9CPT4 166 100% 0 0

Chromosomal Locations for CCDS 28898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56176924 56177003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56177699 56177771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56178264 56178345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56179364 56179425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56182665 56182715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56183739 56183891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGCAGCCCCCAGCGGAGGCTTCTGGACTGCGGTGGTCCTGGCGGCCGCAGCGCTGAAATTGGCCGCCG
CTGTGTCCGAGCCCACCACCGTGCCATTTGACGTGAGGCCCGGAGGGGTCGTGCATTCGTTCTCCCAGGA
CGTAGGACCCGGGAACAAGTTTACATGTACATTCACCTACGCTTCCCAAGGAGGGACCAACGAGCAATGG
CAGATGAGCCTGGGGACAAGTGAAGACAGCCAGCACTTTACCTGTACCATCTGGAGGCCCCAGGGGAAAT
CCTACCTCTACTTCACACAGTTCAAGGCTGAGTTGCGAGGTGCTGAGATCGAGTATGCCATGGCCTACTC
CAAAGCCGCATTTGAGAGAGAGAGTGATGTCCCCCTGAAAAGTGAGGAGTTTGAAGTGACCAAGACAGCA
GTGTCTCACAGGCCTGGGGCCTTCAAAGCTGAGCTCTCCAAGCTGGTGATCGTAGCCAAGGCGGCACGCT
CGGAGCTGTGA

Translation (166 aa):
MAAPSGGFWTAVVLAAAALKLAAAVSEPTTVPFDVRPGGVVHSFSQDVGPGNKFTCTFTYASQGGTNEQW
QMSLGTSEDSQHFTCTIWRPQGKSYLYFTQFKAELRGAEIEYAMAYSKAAFERESDVPLKSEEFEVTKTA
VSHRPGAFKAELSKLVIVAKAARSEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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