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Report for CCDS28904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28904.1 Public Mus musculus 17 Kdm4b 23 108 98 CCDS HistoryNCBI Gene:193796Re-query CCDS DB by CCDS ID:28904.1Re-query CCDS DB by GeneID:193796See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025036.10 ENSMUSP00000025036.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025036.10Link to Ensembl Protein Viewer:ENSMUSP00000025036.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025036Re-query CCDS DB by Protein ID:ENSMUSP00000025036
Original member Current member NCBI NM_172132.3 NP_742144.1 Accepted alive Link to Nucleotide Sequence:NM_172132.3Link to Protein Sequence:NP_742144.1Re-query CCDS DB by Nucleotide ID:NM_172132Re-query CCDS DB by Protein ID:NP_742144Link to BLAST:NP_742144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742144.1 1086 Q91VY5-1 1086 100% 0 0

Chromosomal Locations for CCDS 28904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56351657 56351797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56352976 56353151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56353525 56353639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56355863 56356056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56369123 56369172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56372424 56372527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56375854 56375991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56386083 56386279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56389259 56389342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56389485 56389672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56393718 56394106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56394769 56394889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56396204 56396382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56396497 56396692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56396902 56396978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56397123 56397178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56397302 56397410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56399381 56399566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56399690 56399854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56399949 56400068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56401223 56401315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56401546 56401728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3261 nt):
ATGGGGTCCGAGGACCACAGCGCCCAGAACCCCAGCTGTAAGATCATGACTTTCCGCCCCACCATGGATG
AATTCAGGGACTTCAACAGATATGTGGCGTACATTGAGTCGCAGGGTGCCCACCGTGCTGGCCTGGCCAA
GATCATTCCACCCAAGGAGTGGAAGCCACGGCAGACGTATGATGACATCGACGATGTGGTCATCCCAGCG
CCTATTCAGCAGGTGGTGACGGGCCAGTCGGGGCTTTTCACACAGTACAACATCCAGAAGAAGGCCATGA
CTGTGGGGGAGTACCGCCGCCTAGCCAATAGTGAAAAGTACTGTACCCCACGCCATCAGGACTTCGATGA
CTTGGAGCGCAAGTACTGGAAGAACCTGACCTTTGTCTCACCCATCTATGGAGCTGACATCAGTGGCTCC
CTGTACGACGATGACGTGGCGCAGTGGAACATCGGCAATCTGAGGACCATCCTAGACATGGTGGAGCGCG
AATGCGGGACCATCATTGAGGGCGTGAATACACCCTACTTGTACTTTGGCATGTGGAAGACCACGTTTGC
CTGGCACACAGAGGACATGGACCTCTACAGCATCAACTACCTGCACTTCGGCGAGCCTAAGTCCTGGTAC
GCCATACCACCGGAGCACGGCAAGCGCCTGGAGCGCCTGGCCATAGGCTTCTTCCCTGGGAGCTCACAGG
GCTGTGATGCCTTCCTAAGGCACAAGATGACACTCATCTCGCCCATCATCCTGAAGAAGTACGGCATCCC
CTTCAGCCGGATTACACAGGAAGCTGGGGAGTTCATGATCACGTTCCCCTATGGTTACCATGCGGGCTTC
AACCATGGCTTTAACTGCGCTGAGTCCACTAACTTCGCCACACTGCGCTGGATCGACTATGGCAAAGTGG
CCACACAGTGTACATGTCGAAAGGACATGGTCAAGATCTCCATGGACGTGTTTGTACGCATCCTGCAGCC
CGAACGCTATGAGCAATGGAAGCAAGGCCGTGACCTCACAGTGCTGGACCACACGAGGCCCACAGCCCTG
AGCAGTCCTGAGCTCAGCTCCTGGAGTGCCTCGCGCACCTCCATCAAGGCCAAGCTCCTGCGCAGACAAA
TTAGTGTGAAGGAGAGCAGACCCTGGAGAAAGGCTGAGGAGGAGAGGAGGCGGGAGCCGACCAGGAGGCC
AGGGCCGGCGTCACACCGGAGACGGAGCCAGCCCAAGAAGTCAAAACCTGAAGAGTCCAGGTCTCCAGGG
GAAGCCACGGCTGGGGTATCTACTCTGGATGAGGCCAGGGGCTGCTCCCGAGGAGAGGCCATGCCTGAGG
ACGAGGAGGAGGAGGAGCTGCTACCTTCACAGGGCCATGAGGCCGAGGGTGTGGAAGAGGATGGCAGAGG
CAAGCCTCGGCCTACTAAGGCCAGAAATAAGAAGAAGACTCCCAGCCCGTCGTCACCCCCGTTGCTGTCT
GCCCCACCAGCCCTATTCCCCACCGAGGAGGTCCTGAGGCCACCACCCCAACCCAAGTCTCCAGGGCCAG
CTATGGGCCCCATGGCTGCAGAGGGGGGTCCTCCACCAACACCCCTCAATGTCGTGCCTCCTGGGGCGCC
AGTTGAGGAAGCAGAGGTGCGGCCACGGCCCATTATCCCAATGCTGTACGTGTTGCCCCGCACCAGCAGC
ACCGATGGGGACAGGGAGCACTCTGCCCACGCACAGTTGGCACCCATGGAGCTGGGGCCAGAAGAGGAAA
ACCAGGCCCAGGCTGGTGACTCACAGGGAACAACCCCTTTCTCTAAGCTGAAGGTGGAGATCAAAAAGAG
CCGGCGTCACCCCTTGGGTCGGCCACCCACTCGATCCCCGCTGTCTGTGGTCAAGCAGGAGGCCTCAAGT
GATGAAGAAGCCTTCCTGTTCTCAGGAGAGGATGATGTCACTGATCCTGAGGCCTTGAGATCGCTGCTGT
CCCTGCAGTGGAAGAACAAGGCGGCCAGCTTCCAAGCCGAGAGGAAGTTCAATGCGGCAGCCGCCCTCAG
TGAGCCCTACTGTGCCATCTGTACCCTCTTCTACCCCTACAGCCAGTCAGTACAGACAGAGCGGGACAGT
GCTGTCCAGCCGCCCTCCAAAAGTGGCCAGAGGACACGGCCACTGATCCCTGAGATGTGCTTCACTTCAA
GTGGGGAGAACACAGAGCCGCTGCCTGCTAACTCCTACGTCGGTGAGGACGGCACCAGTCCACTCATCTC
CTGTGCCCACTGCTGCCTGCAGGTCCATGCCAGTTGCTATGGTGTCCGGCCTGAGTTGGCCAAAGAGGGC
TGGACATGTTCCCGGTGTGCGGCCCACGCTTGGACTGCGGAATGCTGTTTGTGCAACCTGCGGGGGGGAG
CGCTACAGAGGACCACAGAGCACAGGTGGATTCACGTGATCTGCGCCATTGCAGTCCCTGAGGTACGATT
CCTCAATGTGATTGAACGCAACCCAGTGGACGTCAGTGCCATCCCTGAGCAGCGATGGAAACTGAAATGC
ATTTACTGCCGCAAGCGTATGAAGAGAGTGTCGGGTGCCTGCATCCAGTGCTCCTATGAGCACTGCTCCA
CATCCTTCCATGTGACCTGTGCGCATGCTGCTGGTGTCCTCATGGAACCCGATGACTGGCCCTATGTGGT
GTCCATCACCTGCCTCAAGCACCGGGCCAGCGGAGCAGGGGGCCAGCTCCTGCGCACAGTGTCCCTGGGC
CAGATCGTCATCACCAAGAACCGCAATGGGCTCTACTATCGCTGCCGGGTCATTGGCACCACTGCGCAGA
CATTCTACGAGGTCAACTTTGACGATGGCTCCTACAGTGACAACCTGTACCCAGAGAGCATCACGAGCAG
AGACTGCCTACGGCTAGGGCCACCTCCTGAGGGCGAGCTGGTGGAGCTTCGGTGGACAGACGGTAATCTG
TACAGAGCCAGGTTTATCTCCATGGCCACCAGCCTCATCTACCAGGTAGAGTTTGAGGATGGGTCTCAGC
TGACTGTGAAGCGTGGGGACATCTTCACACTGGAAGAGGAGCTGCCCAAGAGGGTGCGTTCCCGGCTGTC
ACTGAGCACTGGCACACCACAGGAGCCCAGCTTCTCTGGAGACGATGTGAAGGCTGCCAAGCGCCCACGG
GTGGCCTCAGTGCTGGCCACCACCACTGAGGACACAGGGCGTAGCCCAGAATACCTGTCCTTCATGGAGA
GCCTGCTGCAGGCACAGGGCCGGCCTGGAGCACCCTTCTAG

Translation (1086 aa):
MGSEDHSAQNPSCKIMTFRPTMDEFRDFNRYVAYIESQGAHRAGLAKIIPPKEWKPRQTYDDIDDVVIPA
PIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLERKYWKNLTFVSPIYGADISGS
LYDDDVAQWNIGNLRTILDMVERECGTIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWY
AIPPEHGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEFMITFPYGYHAGF
NHGFNCAESTNFATLRWIDYGKVATQCTCRKDMVKISMDVFVRILQPERYEQWKQGRDLTVLDHTRPTAL
SSPELSSWSASRTSIKAKLLRRQISVKESRPWRKAEEERRREPTRRPGPASHRRRSQPKKSKPEESRSPG
EATAGVSTLDEARGCSRGEAMPEDEEEEELLPSQGHEAEGVEEDGRGKPRPTKARNKKKTPSPSSPPLLS
APPALFPTEEVLRPPPQPKSPGPAMGPMAAEGGPPPTPLNVVPPGAPVEEAEVRPRPIIPMLYVLPRTSS
TDGDREHSAHAQLAPMELGPEEENQAQAGDSQGTTPFSKLKVEIKKSRRHPLGRPPTRSPLSVVKQEASS
DEEAFLFSGEDDVTDPEALRSLLSLQWKNKAASFQAERKFNAAAALSEPYCAICTLFYPYSQSVQTERDS
AVQPPSKSGQRTRPLIPEMCFTSSGENTEPLPANSYVGEDGTSPLISCAHCCLQVHASCYGVRPELAKEG
WTCSRCAAHAWTAECCLCNLRGGALQRTTEHRWIHVICAIAVPEVRFLNVIERNPVDVSAIPEQRWKLKC
IYCRKRMKRVSGACIQCSYEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCLKHRASGAGGQLLRTVSLG
QIVITKNRNGLYYRCRVIGTTAQTFYEVNFDDGSYSDNLYPESITSRDCLRLGPPPEGELVELRWTDGNL
YRARFISMATSLIYQVEFEDGSQLTVKRGDIFTLEEELPKRVRSRLSLSTGTPQEPSFSGDDVKAAKRPR
VASVLATTTEDTGRSPEYLSFMESLLQAQGRPGAPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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