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Report for CCDS28922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28922.1 Public Mus musculus 17 Pspn 23 108 98 CCDS HistoryNCBI Gene:19197Re-query CCDS DB by CCDS ID:28922.1Re-query CCDS DB by GeneID:19197See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002740.2 ENSMUSP00000002740.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002740.2Link to Ensembl Protein Viewer:ENSMUSP00000002740.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000002740Re-query CCDS DB by Protein ID:ENSMUSP00000002740
Original member NCBI NM_008954.3 NP_032980.2 Updated not alive Link to Nucleotide Sequence:NM_008954.3Link to Protein Sequence:NP_032980.2Re-query CCDS DB by Nucleotide ID:NM_008954Re-query CCDS DB by Protein ID:NP_032980
Current member NCBI NM_008954.4 NP_032980.2 Accepted alive Link to Nucleotide Sequence:NM_008954.4Link to Protein Sequence:NP_032980.2Re-query CCDS DB by Nucleotide ID:NM_008954Re-query CCDS DB by Protein ID:NP_032980Link to BLAST:NP_032980.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032980.2 156 O70300 156 99.359% 0 1

Chromosomal Locations for CCDS 28922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56999457 56999773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56999862 57000015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGGCTGCAGGAAGACTTCGGATCCTGTGTCTGCTGCTCCTGTCCTTGCACCCGAGCCTCGGCTGGGTCC
TTGATCTTCAAGAGGCTTCTGTGGCAGATAAGCTCTCATTTGGGAAGATGGCAGAGACTAGAGGGACCTG
GACGCCCCATCAGGGTAACAACCATGTCCGTCTTCCAAGAGCCTTGGCTGGTTCATGCCGACTGTGGAGC
CTGACCCTACCAGTGGCTGAGCTGGGCCTGGGCTATGCCTCGGAGGAGAAGGTCATCTTCCGATACTGTG
CTGGCAGCTGTCCCCAAGAGGCCCATACCCAGCACAGTCTGGTACTGGCCCGGCTTCGAGGGCGGGGTCG
AGCCCATGGCCGACCCTGCTGCCAGCCCACCAGCTATGCTGATGTGACCTTCCTTGATGATCAGCACCAT
TGGCAGCAGCTGCCTCAGCTCTCAGCTGCAGCTTGTGGCTGTGGTGGCTGA

Translation (156 aa):
MAAGRLRILCLLLLSLHPSLGWVLDLQEASVADKLSFGKMAETRGTWTPHQGNNHVRLPRALAGSCRLWS
LTLPVAELGLGYASEEKVIFRYCAGSCPQEAHTQHSLVLARLRGRGRAHGRPCCQPTSYADVTFLDDQHH
WQQLPQLSAAACGCGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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