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Report for CCDS28948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28948.1 Public Mus musculus 17 Ptprm 23 108 98 CCDS HistoryNCBI Gene:19274Re-query CCDS DB by CCDS ID:28948.1Re-query CCDS DB by GeneID:19274See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223982.1 ENSMUSP00000153662.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223982.1Link to Ensembl Protein Viewer:ENSMUSP00000153662.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223982Re-query CCDS DB by Protein ID:ENSMUSP00000153662
Original member NCBI NM_008984.2 NP_033010.2 Updated not alive Link to Nucleotide Sequence:NM_008984.2Link to Protein Sequence:NP_033010.2Re-query CCDS DB by Nucleotide ID:NM_008984Re-query CCDS DB by Protein ID:NP_033010
Current member NCBI NM_008984.3 NP_033010.2 Accepted alive Link to Nucleotide Sequence:NM_008984.3Link to Protein Sequence:NP_033010.2Re-query CCDS DB by Nucleotide ID:NM_008984Re-query CCDS DB by Protein ID:NP_033010Link to BLAST:NP_033010.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033010.2 1452 P28828 1452 100% 0 0

Chromosomal Locations for CCDS 28948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 66667628 66667681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66678001 66678136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66683371 66683534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66685614 66685739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66688251 66688382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66689344 66689517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66690425 66690574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66693463 66693598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66693772 66693926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66698366 66698482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66725740 66725837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66744720 66744756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66747101 66747177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66762129 66762216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66809466 66809653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66814467 66814541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66817826 66817977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66890924 66891056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66919024 66919060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66920023 66920296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66940483 66940585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66944128 66944329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66953068 66953177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66956810 66957118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 67042095 67042388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 67045984 67046158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 67063042 67063157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 67075589 67075667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 67095424 67095695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 67191249 67191371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 67353957 67354029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4359 nt):
ATGAGGACACTTGGGACTTGCCTGGTGACTTTAGCTGGACTTTTGCTAACTGCGGCCGGAGAAACATTTT
CAGGTGGCTGCCTCTTTGATGAACCATACAGCACATGTGGATATAGTCAAGCTGACGAAGATGACTTCAA
CTGGGAGCAGGTGAACACCCTGACCAAACCGACCTCTGACCCCTGGATGCCATCAGGCTCCTTCATGCTG
GTCAACACTTCTGGGAAACCAGAAGGCCAGAGAGCTCACCTGCTCCTGCCTCAGCTTAAGGAAAATGACA
CCCACTGCATCGACTTTCACTACTTTGTATCCAGCAAGAGTAACGCTGCTCCTGGGTTGCTCAATGTCTA
TGTGAAGGTGAATAATGGACCACTGGGGAATCCCATCTGGAACATATCCGGAGACCCCACCCGCACGTGG
CACAGGGCAGAGCTGGCCATCAGCACGTTCTGGCCCAACTTTTACCAGGTGATTTTTGAAGTGGTGACCT
CTGGCCATCAAGGCTACCTTGCTATCGATGAAGTTAAGGTCTTAGGACACCCGTGCACAAGAACTCCCCA
CTTCCTGCGGATTCAGAACGTGGAGGTGAATGCCGGCCAGTTTGCTACCTTCCAGTGCAGCGCCATAGGC
AGGACAGTGGCTGGGGACCGGCTCTGGCTGCAGGGAATTGATGTCCGAGATGCCCCTCTGAAGGAGATAA
AGGTGACTAGTTCCAGAAGATTCATAGCCTCATTTAACGTTGTAAACACGACCAAGAGAGACGCTGGGAA
GTACCGCTGCATGATTTGCACGGAAGGAGGTGTCGGGATATCAAACTACGCAGAATTGGTAGTTAAAGAG
CCACCTGTTCCCATCGCCCCACCTCAGCTCGCCTCTGTCGGAGCAACCTATCTGTGGATACAGCTCAATG
CCAACTCCATCAATGGGGACGGACCCATTGTGGCCCGCGAGGTTGAGTACTGCACAGCCAGCGGGAGCTG
GAATGATCGGCAGCCAGTGGATTCCACGAGTTACAAGATTGGGCACCTTGACCCAGACACAGAGTATGAG
ATCAGTGTGCTTCTTACCAGACCAGGAGAAGGCGGCACTGGGTCTCCCGGGCCAGCTCTGAGAACAAGGA
CAAAGTGTGCCGATCCCATGCGTGGCCCGAGAAAACTAGAAGTTGTGGAGGTCAAATCTCGACAAATCAC
CATCCGCTGGGAGCCGTTTGGATACAATGTAACTCGTTGCCACAGTTATAATCTCACAGTGCACTATGGT
TACCAGGTCGGAGGGCAGGAGCAGGTGCGAGAAGAAGTGAGCTGGGATACAGATAACTCCCACCCTCAGC
ACACCATCACCAACCTGTCCCCGTACACCAACGTCAGCGTGAAGCTTATTCTGATGAACCCGGAGGGCCG
CAAGGAAAGCCAAGAACTCACGGTGCAGACGGATGAAGACCTCCCAGGAGCTGTCCCCACTGAATCCATC
CAAGGCAGTGCCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAGCCGACACAAACATATGGGGTCATCA
CTTTATATGAGATCACCTACAAAGCAGTCAGTTCCTTTGACCCGGAAATAGATTTATCCAACCAAAGTGG
GCGAGTTTCAAAACTGGGAAATGAAACCCATTTTCTGTTCTTTGGCCTGTATCCTGGAACGACGTACTCC
TTCACCATCAGAGCCAGCACAGCGAAGGGGTTCGGACCTCCGGCAACAAACCAGTTCACCACAAAAATAT
CAGCACCATCCATGCCAGCCTATGAATTTGAGACACCTTTGAATCAGACTGATAATACAGTGACTGTGAT
GCTGAAACCTGCACAAAGCAGAGGGGCTCCAGTCAGTGTCTATCAAATCGTTGTTGAGGAAGAACGTCCT
CGGAGAACTAAGAAGACAACAGAGATCTTGAAGTGTTACCCGGTGCCAATTCACTTCCAGAATGCGTCCA
TCCTGAACTCACAGTACTACTTTGCTGCAGAATTTCCTGCAGACAGCCTCCAAGCTGCTCAACCATTTAC
CATTGGTGACAATAAGACATACAATGGCTACTGGAACACCCCCCTCCTCCCCCATAAAAGCTACAGAATT
TATTACCAAGCTGCTAGTCGAGCCAATGGGGAAACCAAAATTGACTGTGTCCGAGTGGCCACAAAAGGGG
CCGTTACTCCAAAGCCTGTCCCTGAACCTGAGAAACAAACAGACCACACGGTTAAAATCGCCGGAGTGAT
TGCAGGCATCTTGCTGTTTGTTATCATATTTCTTGGAGTCGTGCTGGTCATGAAGAAGAGGAAACTGGCC
AAGAAGAGGAAGGAGACGATGAGCAGCACCCGGCAGGAGATGACAGTGATGGTGAATTCTATGGATAAGA
GCTATGCTGAGCAAGGCACCAACTGCGACGAAGCCTTCTCTTTCATGGGCACGCACAATCTTAATGGGAG
ATCTGTGTCCTCGCCATCATCCTTTACCATGAAAACAAACACGCTGAGCACATCGGTGCCGAATTCCTAT
TACCCAGATGAGACCCACACAATGGCCAGTGACACCAGCAGCCTGGCACAGCCCCATACTTATAAGAAAC
GCGAGGCCGCAGACGTGCCTTACCAGACTGGGCAGCTTCACCCGGCCATCCGTGTGGCAGACCTCCTCCA
ACACATCACTCAGATGAAGTGCGCTGAGGGCTATGGCTTCAAGGAGGAGTATGAGAGCTTCTTTGAAGGA
CAGTCTGCACCATGGGACTCTGCTAAGAAAGACGAGAACAGAATGAAGAACAGATACGGGAACATCATTG
CATATGATCACTCTCGGGTACGGCTCCAGATGCTGGAAGGGGACAACAATTCAGACTACATCAATGGCAA
TTACATCGATGGCTATCATCGACCCAATCATTATATTGCAACCCAAGGACCCATGCAGGAGACTATCTAT
GACTTCTGGAGGATGGTGTGGCATGAGAACACGGCAAGCATCATCATGGTGACCAACCTTGTGGAAGTGG
GAAGGGTGAAATGCTGTAAATACTGGCCAGATGACACCGAGATCTACAAAGACATTAAAGTCACCCTAAT
AGATACAGAGCTGCTGGCAGAATATGTGATAAGAACGTTTGCCGTGGAAAAGAGAGGCATTCATGAAATC
CGAGAGATCAGACAGTTTCACTTCACCGGCTGGCCGGACCACGGCGTCCCCTACCATGCCACTGGCCTGC
TGGGATTTGTCCGGCAGGTCAAATCCAAGAGCCCACCCAATGCAGGCCCGCTGGTGGTACACTGCAGTGC
TGGAGCAGGAAGGACAGGTTGCTTCATTGTCATTGATATCATGCTGGACATGGCAGAAAGGGAAGGAGTG
GTGGACATCTACAACTGTGTCAGAGAGCTTCGGTCCAGGAGAGTCAACATGGTGCAGACAGAGGAGCAGT
ACGTCTTTATCCATGATGCGATCCTGGAAGCCTGTCTTTGTGGAGACACCTCCATCCCTGCCTCCCAAGT
CAGGTCTCTCTACTATGACATGAACAAACTGGACCCACAGACAAACTCAAGCCAAATTAAAGAGGAATTC
CGGACTCTCAACATGGTGACCCCCACGCTGCGTGTGGAGGACTGCAGCATCGCACTCCTACCCCGGAACC
ACGAGAAAAATCGCTGCATGGACATCCTGCCTCCGGACCGCTGCCTGCCCTTCCTCATCACCATCGATGG
AGAGAGCAGCAACTACATCAATGCAGCCCTAATGGACAGCTATAAACAGCCTTCAGCATTTATAGTCACC
CAGCATCCTTTGCCAAACACCGTCAAAGACTTCTGGCGACTGGTCTTGGATTACCACTGCACATCCGTAG
TTATGCTGAACGATGTGGATCCTGCCCAGCTGTGTCCACAGTACTGGCCAGAAAATGGAGTGCACAGACA
TGGCCCCATCCAGGTGGAATTCGTGTCTGCAGACTTAGAAGAAGACATCATCAGCAGAATTTTCAGGATT
TACAACGCCTCCAGACCCCAGGATGGACATCGGATGGTTCAGCAGTTCCAGTTCCTGGGCTGGCCGATGT
ACAGGGACACGCCCGTGTCCAAGCGCTCCTTCTTGAAGCTCATACGCCAGGTGGACAAGTGGCAGGAGGA
ATACAATGGCGGCGAAGGCCGCACAGTCGTGCACTGCTTGAACGGAGGAGGCCGCAGTGGTACATTCTGT
GCCATCAGCATTGTCTGTGAGATGCTCCGACACCAGAGAACTGTGGATGTCTTCCATGCTGTCAAGACAT
TGAGGAACAACAAACCAAACATGGTGGACCTCCTGGATCAGTACAAGTTCTGCTATGAGGTGGCCCTGGA
GTACCTGAATTCGGGCTGA

Translation (1452 aa):
MRTLGTCLVTLAGLLLTAAGETFSGGCLFDEPYSTCGYSQADEDDFNWEQVNTLTKPTSDPWMPSGSFML
VNTSGKPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNAAPGLLNVYVKVNNGPLGNPIWNISGDPTRTW
HRAELAISTFWPNFYQVIFEVVTSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIG
RTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMICTEGGVGISNYAELVVKE
PPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYE
ISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYG
YQVGGQEQVREEVSWDTDNSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELTVQTDEDLPGAVPTESI
QGSAFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYS
FTIRASTAKGFGPPATNQFTTKISAPSMPAYEFETPLNQTDNTVTVMLKPAQSRGAPVSVYQIVVEEERP
RRTKKTTEILKCYPVPIHFQNASILNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPHKSYRI
YYQAASRANGETKIDCVRVATKGAVTPKPVPEPEKQTDHTVKIAGVIAGILLFVIIFLGVVLVMKKRKLA
KKRKETMSSTRQEMTVMVNSMDKSYAEQGTNCDEAFSFMGTHNLNGRSVSSPSSFTMKTNTLSTSVPNSY
YPDETHTMASDTSSLAQPHTYKKREAADVPYQTGQLHPAIRVADLLQHITQMKCAEGYGFKEEYESFFEG
QSAPWDSAKKDENRMKNRYGNIIAYDHSRVRLQMLEGDNNSDYINGNYIDGYHRPNHYIATQGPMQETIY
DFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPDDTEIYKDIKVTLIDTELLAEYVIRTFAVEKRGIHEI
REIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPNAGPLVVHCSAGAGRTGCFIVIDIMLDMAEREGV
VDIYNCVRELRSRRVNMVQTEEQYVFIHDAILEACLCGDTSIPASQVRSLYYDMNKLDPQTNSSQIKEEF
RTLNMVTPTLRVEDCSIALLPRNHEKNRCMDILPPDRCLPFLITIDGESSNYINAALMDSYKQPSAFIVT
QHPLPNTVKDFWRLVLDYHCTSVVMLNDVDPAQLCPQYWPENGVHRHGPIQVEFVSADLEEDIISRIFRI
YNASRPQDGHRMVQQFQFLGWPMYRDTPVSKRSFLKLIRQVDKWQEEYNGGEGRTVVHCLNGGGRSGTFC
AISIVCEMLRHQRTVDVFHAVKTLRNNKPNMVDLLDQYKFCYEVALEYLNSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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