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Report for CCDS2906.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2906.2 Public Homo sapiens 3 KBTBD8 24 110 108 CCDS HistoryNCBI Gene:84541Re-query CCDS DB by CCDS ID:2906.2Re-query CCDS DB by GeneID:84541See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 2906.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2906.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417314.2 ENSP00000401878.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000417314.2Link to Ensembl Protein Viewer:ENSP00000401878.2Re-query CCDS DB by Nucleotide ID:ENST00000417314Re-query CCDS DB by Protein ID:ENSP00000401878
Original member Current member NCBI NM_032505.3 NP_115894.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032505.3Link to Protein Sequence:NP_115894.2Re-query CCDS DB by Nucleotide ID:NM_032505Re-query CCDS DB by Protein ID:NP_115894Link to BLAST:NP_115894.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115894.2 601 Q8NFY9-1 601 100% 0 0

Chromosomal Locations for CCDS 2906.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 66998356 66998371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 66998981 66999191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67003195 67004309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67007922 67008385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGGCCGCGTCGGCAGATTTAAGTAAGTCTTCCCCAACACCGAATGGGATTCCATCTTCAGACCCAGCCA
GCGATGCCATGGACCCCTTCCATGCTTGCAGTATTCTTAAGCAACTCAAAACAATGTACGATGAAGGACA
GTTGACAGACATTGTAGTGGAAGTGGATCACGGGAAAACATTTTCCTGTCATAGAAACGTTCTTGCTGCA
ATCAGCCCTTACTTCAGATCCATGTTCACTAGCGGCCTTACAGAAAGTACTCAAAAAGAAGTTCGAATAG
TTGGTGTTGAAGCTGAATCGATGGATTTAGTGTTGAACTATGCCTACACTTCCAGAGTTATTCTTACAGA
GGCCAATGTTCAAGCCTTGTTCACTGCAGCTAGCATCTTCCAGATTCCTTCCATCCAAGACCAATGTGCT
AAGTATATGATCAGTCATTTGGACCCACAGAATTCTATTGGGGTCTTTATCTTTGCTGATCATTATGGTC
ATCAGGAACTCGGAGATCGATCAAAAGAATACATTCGTAAAAAGTTTCTGTGTGTCACCAAAGAACAAGA
GTTTCTCCAGTTGACAAAAGACCAACTGATAAGTATACTAGACAGTGACGATTTAAATGTAGACCGAGAA
GAGCATGTTTATGAAAGCATTATAAGGTGGTTTGAGCATGAACAGAATGAAAGAGAAGTGCACCTTCCAG
AAATTTTTGCTAAATGCATACGTTTTCCTCTGATGGAAGATACCTTTATAGAGAAAATTCCACCTCAGTT
TGCACAGGCTATAGCCAAAAGCTGTGTAGAAAAGGGACCATCCAACACCAATGGCTGTACACAGAGGCTT
GGAATGACTGCTTCTGAAATGATCATATGTTTTGATGCTGCCCACAAACACTCAGGAAAGAAGCAAACAG
TGCCTTGTCTAGATATAGTCACAGGAAGGGTGTTTAAACTATGCAAACCACCAAATGACCTGAGAGAAGT
TGGGATTCTTGTATCACCAGATAATGACATTTACATTGCAGGAGGGTACAGGCCAAGCAGCAGTGAGGTC
TCCATCGACCATAAGGCAGAAAATGATTTCTGGATGTATGATCATTCCACCAATAGATGGCTATCCAAAC
CATCCTTGCTTCGAGCCAGAATAGGCTGCAAACTTGTCTATTGCTGTGGTAAAATGTATGCAATCGGAGG
TCGTGTTTATGAAGGTGATGGGAGAAACTCACTAAAATCTGTTGAGTGCTACGACAGTAGAGAGAATTGT
TGGACGACTGTTTGCGCGATGCCAGTTGCAATGGAATTTCATAATGCTGTGGAGTACAAAGAGAAGATCT
ATGTTTTACAGGGAGAATTTTTTCTCTTCTATGAGCCTCAAAAAGACTACTGGGGTTTCTTAACCCCCAT
GACTGTGCCTAGAATCCAGGGCTTAGCAGCTGTATACAAGGACTCTATCTACTACATAGCTGGAACCTGT
GGAAATCATCAACGTATGTTTACTGTAGAAGCCTATGATATTGAGCTAAATAAATGGACTCGTAAGAAAG
ACTTTCCATGTGATCAGTCCATAAATCCATACCTTAAACTGGTACTTTTCCAGAACAAACTCCATTTATT
TGTTCGAGCTACTCAAGTGACTGTTGAAGAACACGTCTTCAGAACCAGCAGAAAAAATTCCCTTTACCAA
TATGATGACATTGCTGACCAGTGGATGAAAGTGTATGAGACCCCAGATCGGCTCTGGGACCTTGGCCGGC
ATTTTGAATGTGCTGTTGCTAAACTGTATCCTCAGTGTCTTCAGAAAGTACTCTAA

Translation (601 aa):
MAASADLSKSSPTPNGIPSSDPASDAMDPFHACSILKQLKTMYDEGQLTDIVVEVDHGKTFSCHRNVLAA
ISPYFRSMFTSGLTESTQKEVRIVGVEAESMDLVLNYAYTSRVILTEANVQALFTAASIFQIPSIQDQCA
KYMISHLDPQNSIGVFIFADHYGHQELGDRSKEYIRKKFLCVTKEQEFLQLTKDQLISILDSDDLNVDRE
EHVYESIIRWFEHEQNEREVHLPEIFAKCIRFPLMEDTFIEKIPPQFAQAIAKSCVEKGPSNTNGCTQRL
GMTASEMIICFDAAHKHSGKKQTVPCLDIVTGRVFKLCKPPNDLREVGILVSPDNDIYIAGGYRPSSSEV
SIDHKAENDFWMYDHSTNRWLSKPSLLRARIGCKLVYCCGKMYAIGGRVYEGDGRNSLKSVECYDSRENC
WTTVCAMPVAMEFHNAVEYKEKIYVLQGEFFLFYEPQKDYWGFLTPMTVPRIQGLAAVYKDSIYYIAGTC
GNHQRMFTVEAYDIELNKWTRKKDFPCDQSINPYLKLVLFQNKLHLFVRATQVTVEEHVFRTSRKNSLYQ
YDDIADQWMKVYETPDRLWDLGRHFECAVAKLYPQCLQKVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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