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Report for CCDS29104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29104.1 Public Mus musculus 18 Fhod3 23 108 98 CCDS HistoryNCBI Gene:225288Re-query CCDS DB by CCDS ID:29104.1Re-query CCDS DB by GeneID:225288See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037097.8 ENSMUSP00000041361.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037097.8Link to Ensembl Protein Viewer:ENSMUSP00000041361.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037097Re-query CCDS DB by Protein ID:ENSMUSP00000041361
Original member Current member NCBI NM_175276.4 NP_780485.2 Accepted alive Link to Nucleotide Sequence:NM_175276.4Link to Protein Sequence:NP_780485.2Re-query CCDS DB by Nucleotide ID:NM_175276Re-query CCDS DB by Protein ID:NP_780485Link to BLAST:NP_780485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780485.2 1578 Q76LL6-1 1578 100% 0 0

Chromosomal Locations for CCDS 29104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24709609 24709773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24754219 24754325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24770483 24770547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24897637 24897704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24903893 24903998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24969160 24969254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24985214 24985325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24989973 24990067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24994416 24994559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25001791 25002032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25020662 25020757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25022622 25022978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25028065 25028169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25056260 25056394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25060326 25060376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25066217 25066425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25085334 25085612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25090030 25090907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25101526 25101684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25110055 25110237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25112546 25112665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25113510 25113671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25115699 25115889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25120119 25120311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25125743 25125917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25130533 25130694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25132911 25132993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4737 nt):
ATGGCCACGCTGGCTTGTCGCGTGCAGTTCTTGGACGACACCGATCCTTTCAACAGCACCAACTTCCCAG
AGCCAAGCCGGCCACCGCTGTTCACATTCCGCGAGGACCTGGCTCTGGGCACCCAGTTGGCCGGGGTCCA
TCGGCTGCTGCGGGCGCCGCACAAGCTCGATGACTGTACCCTGCAGCTGTCCCACAATGGCGCCTACCTG
GATCTGGAGGCCACGCTGGCGGAACAGCGGGATGAGCTAGAAGGCTTCCAGGATGACACAGGGCGGGGCA
AGAAGAACAGCATTATTCTGAGGACACAGCTGTCTGTGAGGGTCCATGCCTGCATTGAAAAGCTGTACAA
CTCCAGTGGCCGAGATCTAAGAAGGGCCCTTTTCTCACTGAAGCAGATATTTCAGGATGACAAGGATTTG
GTGCATGAATTTGTCATAGCTGAAGGTCTGACCTGTTTGATCAAAGTGGGAGCCGAGGCGGATCAGAACT
ATCAGAACTACATCCTGAGGGCTCTGGGTCAGATTATGTTGTATGTGGATGGGATGAATGGCGTCATCAA
CCACAGCGAGACCATCCAGTGGCTTTACACGCTCGTTGGGTCGAAGTTCCGCCTGGTAGTGAAGACAGCC
CTGAAGCTTCTTCTGGTCTTTGTGGAGTATTCTGAGTCCAATGCACCACTTCTCATTCAGGCCGTTTCTG
CTGTCGACACCAAAAGAGGTGTCAAACCCTGGTCCAACATCATGGAAATCTTGGAGGAAAAAGATGGAGT
TGACACAGAGCTATTGGTTTATGCAATGACTCTAGTGAACAAGACACTGGCAGGACTGCCAGATCAAGAC
ACCTTCTATGACGTAGTAGACTGCCTGGAAGAGCTGGGCATCGCCGCTGTGTCCCAAAGGCACTTGAACA
AGAAAGGGACAGACCTGGACTTGCTGGAGCAGTTTAATATCTATGAGGTGGCACTCAGGCATGAAGATGG
TGATGAGACAGCTGAGCCACCCCCCAGTGGGCACCGGGACCGGAGGAGGGCCAGCATGTGTTCTGGTGGC
ACTGTGGGTGAGCAACAGGGCCTTGACCGCAGAAGGAGCCGTAGACACTCAATCCAGAATATCAAGAGCC
CACTGTCAGCTCCCACCAGCCCCTGCTCCCCGTCTGTTCCTGCCTTCAAACCCAGCCAAGTTCGAGACCT
CTGTGAAAAGGATGAGGAGGAGGAGGAGGAAGAAGAACAGCCAATCACGGAGCCCAATTCAGAGGAGGAG
AGAGAGGACGATGCCCAGTGTCAGGGCAAGGACAGCAAGGCCAGCTCTGCCTCCGGTCAGAGCTCCCCTG
GGAAGGATGCTGCTCCTGAGAGTTCTGCACTCCATACCACCTCAAGTCCCACCTCACAGGGAAGGTGGCT
TTCTGCCAGCACAGCAGCACGGAGCCCTGTGCTTGGTGGGACCTCTGGGCCTGAGGCCAGCCGGCCTGCT
GCTCGCTTGCTACCTCCCAGCCCTGGCTTGGCCACTCGGCCCTCCACAGCACCAAAGGTGTCTCCAACCA
TAGACAAGCTGCCCTACGTGCCCCACAGCCCCTTCCACCTCTTCTCCTATGACTTTGAAGATTCACCCCT
CCTCACCAAGGACAAGGGAGGAGACTCTCAGACAGAAAACAGATACAGCAATTTCAGCAGCAACTCTTTC
CAATCCTCCAGACCCTCTCCTGGACCTAGTGGGTCCCCATCTTATGCATCATCCTTCTCATCCCCACAGG
ATACCAGGTCATCGCCAAGTGGCCTTCTCACATCCTCGTTCAGGCAGCACCAAGAGTCACTGGCAGCAGA
GAGAGAGCGGAGGCGGCAAGAGAGAGAGGAAAGACTGCAGAGGATAGAACGGGAAGAAAGGAACAAATTC
AACCGGGAATATCTAGACAAAAGGGAGGAGCAAAGGCAAGCAAGAGGAGAAAGATACAAATACTTGGAGC
AGTTGGCAGCCGAGACGCAGGAGAAGGAGCCTAGAAGCCAGAGCGTGAGCCGGGGTAGAGCTGACCTCTC
CTTGGACCTGAGCTTGCCTGCAGCCCCTGCTCCACCTTCCCCTTCAAGCCAGAGTCCCTCTGCTGACTCA
CAAGAGGCTCTCCCTGTGCCTTCATCCCCACCCACTCTGCAGTGCCCCCAAGTAAGTGGTAAGGACCACG
AGCCTGAACTGGAGGCAGAAGCTGGGCAAGGTGCTGATGAAGCCAGCCAGGATATAGCATCTGCCCACAG
GGGAGCAGAGAGCCAAGAAGAGCCGGTGCTGGAGCTAGAGCCAGAGGAAAGAGCTTCACTGAGTGAAAAA
GAGAGGCAAAACGAAGAGGTGAATGAGAGGGACAACTGTTCTGCTTCCAGCATCTCGTCCTCCAGCAGCA
CCTTGGAGAGGGAAGAGAAGGAAGACAAACTGTCTGAAGACAGGGCGACCGGTTTGTGGTCCACCAGCCT
TCAGGATGTGGGTGTGAATGGACAGTGTGGTGACATCCTTACCAGCAAAAGGTTCATGCTGGACATGCTG
TATGCCCATAACAGAAAATCCACAGAAGATGAGGAAAAAGATGACGGCGAGCCTGGGAGGTCTGCGCAGG
AGGTGGAGGCAGTGGCCAGCCTCGCCACCAGGATATCCACTCTGCAGGCCAACTCTCAGGCCCCAGAGGA
GAGCATCAAGAGGGTGGACATTGGCTGTCTAGACAACCGGGGCAGTGTGAAGGCATTTGCTGAGAAATTC
AACAGTGGAGAAGTAGGGAGGGGTGCCATCTCTCCTGATGTGGAGTCTCAGGACAAGGTCCCGGATACAC
CCCCAGCACAGCTGAAGACTGAGTCTGATTACATCTGGGACCAGCTCATGGCCAATCCGAGGGAGCTCAG
AATCCAAGACATGGATTTCACAGACCTAGGGGAGGAGGACGATATCGATGTTTTGGATGTGGATCTTGGC
CACCGGGAAGCCCCAGGGCCACCCCCTCCACCCCCTCCCACCTTCCTGGGTTTGCCACCCCCACCCCCTC
CACCCCTGTTGGACAGCGTGCCTCCCCCACCAGTCCCCGGTAATTTATTGGCTTCTCCTGTGTTCAACAC
TCCTCAGGGCTTAGGGTGGTCCCAGGTACCCAGGGGTCAGCCAGCGTTCACCAAGAAAAAGAAGACGATC
CGGCTGTTCTGGAACGAAGTCCGGCCCTTTGAGTGGCCAAGTAAGAACAATCGCCGGTGCAGGGAATTCC
TGTGGTCAAAACTGGAACCCATTAAGGTGGACACTTCCAGACTCGAGCACCTGTTTGAGTCCAAGTCTAA
GGAGCTGTCTGTCACCAAGAAAACGGCTGCAGATGGTAAACGGCAGGAGATCATTGTTCTGGATTCCAAG
AGGAGCAATGCCATCAACATCGGCCTGACGGTGCTGCCCCCTCCAAGGACAATTAAGATAGCCATTTTGA
ACTTTGATGAGTATGCCTTAAACAAAGAAGGGATCGAGAAAATTCTGACCATGATTCCAACTGAAGAGGA
GAAGCAGAAAATCCAGGAGGCTCAGCTGGCTAACCCGGAAGTGCCGTTGGGCAGTGCAGAGCAGTTCCTT
CTCACACTCTCTTCCATCAGTGAGCTCTCGGCTCGGCTCCACCTGTGGGCATTCAAAATGGATTATGAAA
CCACAGAAAAGGAAGTGGCCGAACCACTTTTGGACCTGAAGGAAGGAATAGACCAGTTGGAGAACAATAA
GACTCTGGGCTTCATCCTGTCTACTCTCCTTGCCATTGGGAACTTTCTAAATGGAACTAATGCCAAAGCA
TTTGAGTTAAGCTACCTCGAGAAGGTTCCAGAAGTCAAAGATACAGTGCACAAGCAGTCTCTTCTCCACC
ACGTGTGCACCATGGTAGTGGAAAACTTTCCGGACAGCTCGGATCTGTACTCAGAGATTGGGGCCATCAC
TAGGTCAGCCAAGGTTGACTTTGATCAACTTCAGGATAATTTATGTCAGATGGAGAGACGCTGCAAAGCT
TCATGGGACCACCTCAAGGCGATTGCAAAACACGAGATGAAGCCTGTTTTGAAACAGCGGATGTCAGAGT
TCCTAAAAGACTGTGCAGAGCGAATTATAATTTTAAAGATCGTCCATCGGAGGATAATTAACAGATTTCA
CTCATTTTTACTGTTTATGGGCCATCCCCCTTATGCAATTCGAGAGGTGAACATCAACAAGTTCTGCAGG
ATCATCAGTGAGTTTGCCCTGGAGTATCGCACGACCAGGGAAAGGGTTCTACAGCAGAAACAGAAGCGGG
CCAACCACAGAGAGAGAAACAAGACCAGAGGGAAGATGATCACTGACTCTGGCAAGTTCTCTGGCAGTTC
TCCAGCAGCACCGAGCCAGCCACAGGGTCTGAGCTATGCTGAGGATGCAGCCGAACATGAGAACATGAAG
GCCGTGTTGAAAACCTCCTCCCCTGCGCTGGAGGACGCCACCCCAGTGCTTGGTGTCCGCACTCGCAGCC
GGGCAAGCCGAGGATCCACTAGTTCATGGACTATGGGAACTGAGGAGTCACCTAGTGTCACTGATGATGC
GGCTGATGAGATCATGGACCGCATTGTCAAATCAGCCACCCAAGTGCCCAGTCAGAGAGTGGTGCCACGG
GAGAGAAAGCGTTCCAGGGCCAACCGCAAATCTTTGCGAAGGACCTTGAAGAGTGGCCTGACTCCAGAAG
AAGCCAGAGCCCTGGGCCTGGTTGGCACATCTGAACTGCAACTGTGA

Translation (1578 aa):
MATLACRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLRAPHKLDDCTLQLSHNGAYL
DLEATLAEQRDELEGFQDDTGRGKKNSIILRTQLSVRVHACIEKLYNSSGRDLRRALFSLKQIFQDDKDL
VHEFVIAEGLTCLIKVGAEADQNYQNYILRALGQIMLYVDGMNGVINHSETIQWLYTLVGSKFRLVVKTA
LKLLLVFVEYSESNAPLLIQAVSAVDTKRGVKPWSNIMEILEEKDGVDTELLVYAMTLVNKTLAGLPDQD
TFYDVVDCLEELGIAAVSQRHLNKKGTDLDLLEQFNIYEVALRHEDGDETAEPPPSGHRDRRRASMCSGG
TVGEQQGLDRRRSRRHSIQNIKSPLSAPTSPCSPSVPAFKPSQVRDLCEKDEEEEEEEEQPITEPNSEEE
REDDAQCQGKDSKASSASGQSSPGKDAAPESSALHTTSSPTSQGRWLSASTAARSPVLGGTSGPEASRPA
ARLLPPSPGLATRPSTAPKVSPTIDKLPYVPHSPFHLFSYDFEDSPLLTKDKGGDSQTENRYSNFSSNSF
QSSRPSPGPSGSPSYASSFSSPQDTRSSPSGLLTSSFRQHQESLAAERERRRQEREERLQRIEREERNKF
NREYLDKREEQRQARGERYKYLEQLAAETQEKEPRSQSVSRGRADLSLDLSLPAAPAPPSPSSQSPSADS
QEALPVPSSPPTLQCPQVSGKDHEPELEAEAGQGADEASQDIASAHRGAESQEEPVLELEPEERASLSEK
ERQNEEVNERDNCSASSISSSSSTLEREEKEDKLSEDRATGLWSTSLQDVGVNGQCGDILTSKRFMLDML
YAHNRKSTEDEEKDDGEPGRSAQEVEAVASLATRISTLQANSQAPEESIKRVDIGCLDNRGSVKAFAEKF
NSGEVGRGAISPDVESQDKVPDTPPAQLKTESDYIWDQLMANPRELRIQDMDFTDLGEEDDIDVLDVDLG
HREAPGPPPPPPPTFLGLPPPPPPPLLDSVPPPPVPGNLLASPVFNTPQGLGWSQVPRGQPAFTKKKKTI
RLFWNEVRPFEWPSKNNRRCREFLWSKLEPIKVDTSRLEHLFESKSKELSVTKKTAADGKRQEIIVLDSK
RSNAINIGLTVLPPPRTIKIAILNFDEYALNKEGIEKILTMIPTEEEKQKIQEAQLANPEVPLGSAEQFL
LTLSSISELSARLHLWAFKMDYETTEKEVAEPLLDLKEGIDQLENNKTLGFILSTLLAIGNFLNGTNAKA
FELSYLEKVPEVKDTVHKQSLLHHVCTMVVENFPDSSDLYSEIGAITRSAKVDFDQLQDNLCQMERRCKA
SWDHLKAIAKHEMKPVLKQRMSEFLKDCAERIIILKIVHRRIINRFHSFLLFMGHPPYAIREVNINKFCR
IISEFALEYRTTRERVLQQKQKRANHRERNKTRGKMITDSGKFSGSSPAAPSQPQGLSYAEDAAEHENMK
AVLKTSSPALEDATPVLGVRTRSRASRGSTSSWTMGTEESPSVTDDAADEIMDRIVKSATQVPSQRVVPR
ERKRSRANRKSLRRTLKSGLTPEEARALGLVGTSELQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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