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Report for CCDS29157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29157.1 Public Mus musculus 18 Apbb3 23 108 98 CCDS HistoryNCBI Gene:225372Re-query CCDS DB by CCDS ID:29157.1Re-query CCDS DB by GeneID:225372See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001415.8 ENSMUSP00000001415.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001415.8Link to Ensembl Protein Viewer:ENSMUSP00000001415.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001415Re-query CCDS DB by Protein ID:ENSMUSP00000001415
Original member Current member NCBI NM_146085.2 NP_666197.1 Accepted alive Link to Nucleotide Sequence:NM_146085.2Link to Protein Sequence:NP_666197.1Re-query CCDS DB by Nucleotide ID:NM_146085Re-query CCDS DB by Protein ID:NP_666197Link to BLAST:NP_666197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666197.1 486 Q8R1C9 486 100% 0 0

Chromosomal Locations for CCDS 29157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36671439 36671675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36674950 36675141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36675281 36675396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36675663 36675746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36676171 36676255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36676363 36676477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36676617 36676622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36676865 36676992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36677110 36677256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36677445 36677505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36678394 36678470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36678550 36678713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36678997 36679045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGCTGGGCAAGGATTATATGCTGGCCATCATTCTGGTCAACTGCGATGATGACTTGTGGGGGGACCAAA
ATCTGGAGGGGGAAACAGGCCTACCCCCTGGCTGGAGAAAGATCCGTGATGCTGCAGGAACTTATTATTG
GCATGTACCCAGCGGTAGCACTCAGTGGCAGCGCCCAACCTGGGAGCTACCAGGTGCAGAGGACCCAGGA
AGGGGAACAGAGGGGATTTGGGAACTGCGACCCCCCAAGGGAAGATCTTTCTCCAGCCTGGACAGTTCAT
TGAACCGGAGTAACTCTCTAACATGGTATAGTGAAGATTCCTATGTCCGGAGCCTGGAGCCAGGAGCTAA
GTGCTTTGCAGTCCGCTCTCTGGGCTGGGTAGAGGTCCCCGAGGAGGACCTGGCGCCAGGGAAGAGCAGT
ATTGCTGTCAATAACTGTATCCAGCAGCTGGCCCAGACCCGAAACCGGAGCCAGCCTCATGATGGTACCT
GGGGTGAGGGCCAGAACATGCTGATGATCCTGAAAAAGGATGCCATGAGCCTGCTGAATCCCCTGGACCA
CAGCCTGATCCATTGCCAGCCTCTGGTTCACATCCGTGTGTGGGGTGTGGGCAGCTCCAAGGGCCGTGAC
AGGGACTTCGCTTTTGTTGCGGGTGACAAAGACAGCTGTATGCTCAAATGTCATGTGTTTCACTGTGATG
TTCCCGCAAAAGCCATAGCAAGTGCTCTACAGGGGCTCTGTGCACAGATCTTGTCAGAGAGGGTAGGAGT
CAGTGGAGAGGCTGCTTGCTGTTCCCCAGATCCTATTTCCCCTGAAGACTTACCTAGACAAGTGGAGTTG
CTGGATGCAGTGAGCCAGGCTGCTCAGAAGTATGAGGCACTGTACATGGGGATCCTACCAGTCACTAAAG
CCATGGGTATGGATGTGCTGAATGAGGCCATTGGTACCCTCACTGCCCGGGGGGACCGGAAAACCTGGGT
CCCTGCTATGCTCAGTGTGTCTGACTCTCTGATGACTGCACATGCTATCCAGGCAGAGGCTGGTGCAGAG
GAAGAGCCACTGTGGCAGTGCCCTGTTCGCCTTGTAACCTTTATTGGTGTTGGCCGTGATCCGCATACCT
TTGGCCTCATCGCTGATCTTGGTTGTCAGAGCTTCCAGTGTGCAGCTTTTTGGTGCGAGCCTCATGCTGG
GGGACTCTCTGAAGCTGTGCAAGCCGCCTGCATGGTTCAGTACCAGAAGTGTCTAGTGGCCTCAGCAGCT
CGGGGTAAGGCCTGGGGTGCTCAGGCCCGTGCTCGCCTGCGGCTCAAGCGGACCAGCTCCATGGACTCCC
CAGGCGGCCCCCTTCCTCCCCCTCTACTCAAAGGAGGGGCTGGGGGTGCTGGAGCAGCTCCTCGAAAGCG
GGGTGTCTTCTCATTTCTTGATGCCTTCAGGCTAAAACCTTCTCTTCTCCATATGTCCTAA

Translation (486 aa):
MLGKDYMLAIILVNCDDDLWGDQNLEGETGLPPGWRKIRDAAGTYYWHVPSGSTQWQRPTWELPGAEDPG
RGTEGIWELRPPKGRSFSSLDSSLNRSNSLTWYSEDSYVRSLEPGAKCFAVRSLGWVEVPEEDLAPGKSS
IAVNNCIQQLAQTRNRSQPHDGTWGEGQNMLMILKKDAMSLLNPLDHSLIHCQPLVHIRVWGVGSSKGRD
RDFAFVAGDKDSCMLKCHVFHCDVPAKAIASALQGLCAQILSERVGVSGEAACCSPDPISPEDLPRQVEL
LDAVSQAAQKYEALYMGILPVTKAMGMDVLNEAIGTLTARGDRKTWVPAMLSVSDSLMTAHAIQAEAGAE
EEPLWQCPVRLVTFIGVGRDPHTFGLIADLGCQSFQCAAFWCEPHAGGLSEAVQAACMVQYQKCLVASAA
RGKAWGAQARARLRLKRTSSMDSPGGPLPPPLLKGGAGGAGAAPRKRGVFSFLDAFRLKPSLLHMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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