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Report for CCDS29177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29177.1 Public Mus musculus 18 Pcdhb10 23 108 98 CCDS HistoryNCBI Gene:93881Re-query CCDS DB by CCDS ID:29177.1Re-query CCDS DB by GeneID:93881See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051126.3 ENSMUSP00000056420.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051126.3Link to Ensembl Protein Viewer:ENSMUSP00000056420.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000051126Re-query CCDS DB by Protein ID:ENSMUSP00000056420
Original member Current member NCBI NM_053135.2 NP_444365.1 Accepted alive Link to Nucleotide Sequence:NM_053135.2Link to Protein Sequence:NP_444365.1Re-query CCDS DB by Nucleotide ID:NM_053135Re-query CCDS DB by Protein ID:NP_444365Link to BLAST:NP_444365.1

Chromosomal Locations for CCDS 29177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37411873 37414266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGAGATGACACTAGCAAAAACGCCAGAGAACAGGCAAGTCCTTTTTTTTACTATACTATTGCTATTAT
GGAAGTCTTGTGCCGATGCAATTATATATTCTATACCAGAAGAAACAGAGAGTGGCTATTTGGTGGCTAA
TTTGGCAAAAGATCTGGGGCTCCGAGTTGGAGAGCTGGCTATTAGGGGGGCACGAATCCATTACAAAGGA
AACAAAGAGCTCTTGCAGCTGGATGCAGAGACTGGGAATTTATTCCTGAAGGAAAAACCAGACCGTGAGG
TGCTGTGCAGGGCGACAGAACCCTGTGTGCTGCACTTCCAGATCATACTGGAAAACCCTGTGCAGTTCTT
CCAAACTGAACTGCAGCTCACAGATATAAATGACCACTCTCCAGAGTTCCCTGACCGGAAAATGCTACTG
AAAATCCCTGAGAGCGCCCAGCCAGGGACAACGTTTCCTCTGAAGGCAGCCCAGGACCCTGACATAGGGA
GCAATGCTGTTCAGAACTACACAGTCAGTCCCAACCTCCATTTCCATGTGGTTACTCTCAGTCGCTCAGA
TGGCAGGAAATACCCAGAGCTGGTGCTGGACAGAGCCCTGGACAGGGAGGAGCAGCCTGAACTCACTTTA
ATCCTCACTGCTCTGGATGGTGGAGCTCCACCCAGGTCAGGAACCACCGAAGTTCACATTGAAGTCGTGG
ACATCAATGATAACGCCCCCCAGTTTATACAGTCACTCTATGAGGTGCAGATTCTTGAAAATAGCCCCCT
TGATGCCTTAGTTGCCACAGTCTCTGCCAGGGATTTAGATGCTGGGATATATGGCAAGGTAGCCTACTCT
CTGTTTCAGGATGATGGAATATCTCAACCATTTGTAATAGATGAAATCACAGGAGAAATTCGTCTTAAAG
GGGCACTGGATTTTGAGGCAACTCCGTATTATAACATGGAAATTGTAGCTACAGACCCAGGAGGCTTTTC
AGGAAAATGCACTGTGGTTATCCAGGTGGTGGATGTGAATGACAATGCCCCTAAGCTCACCATATCTTCA
CTCAATAGTTCTATCCCAGAAAATGCTCCTGAGACTGTAGTGGCTGTTTTCAGTGTTTCTGATCCGGATT
CTGGGGAAAATGGAAGGATGGTGTGTTCTATTCAGAACGAACTTCCATTTCTTTTGAAGTCCACATTTGA
GAACTATTATACTTTAGTAACAGAGGGGACACTTGATAGAGAGAGCAAAGCTGAATACAACATTACTATC
TCCGTCACCGACCTGGGCACCCCCAGGCTCACAACCCAGCACACCATAACAGTGCAGGTGTCTGACATCA
ACGATAATGCCCCCACCTTCACCCGAACCTCCTACACCATGTTCATCCGGGAGAACAACAGCCCTGCCCT
GCACATTGGCACCATCAGCGCCACAGACTCAGACGCAGGCTCCAATGCCCACATCACATACTCGCTGCTG
CCGCCCCATGATCCGCAGCTGACCCTCACCTCTCTTGTCTCCATCAATGAAGACAATGGGCAGCTGTTCG
CACTCAGGGCTCTGGACTATGAGGCCCTGCGGGCCTTCGAGTTTCATGTTCGCGCCACAGACCGTGGTTC
ACCCGCGCTTAGCAGCCAGGCTTTGGTACTCGTGGTGGTGCTGGACGACAATGACAATGAGCCCTTCGTG
CTCTACCCGTTGCAGAACTCTTCTGCGCCCTGTAAGGAGCTAGTACCCAGAGCTGCGGAGGCAGGTTACT
TAGTCACCAAGGTGGTGGCTGTGGACCGCGACTCTGGCCAGAATGCCTGGCTGTCATTCCAGTTACTCAA
GGCCACGGAGCCCGGGCTGTTCAGCGTGTGGGCGCACAATGGGGAGGTGCGCACCACCAGGCTGTTGAGT
GAGCGAGATGCACCCAAGCACAGGCTGCTGCTGGTGGTCAAGGACAATGGGGATCCTCCGCGCTCTGCCA
GTGTCACACTGCATGTGTTGCTGGTGGATGGCTTCTCTCAGCCCTACCTGCCTTTGTCTGAAGTCGTGCA
GGATCCCGCTCAGGAAGGTGATGACGCTCTCACGCTGTACTTGGTCATTGCTTTGGCATCTGTGTCTTCA
CTTTTCCTCATTTCTGTTCTGCTCTTCGTTGGGATGAAGCTGTGCAAGAGGGCCAGGTCGCCTTCTCTGG
GTGTCTGCTCTGTGCCTGAGGGCCACTTTCCTGGCCACCTGGTGGATGTTAGCGGAACTGGGACTCTGTC
CCAGAGCTACCAGTATGAGGTGTGTTTATCGGGGGACTCTGGGACTGGTGAGTTCAAATTCCTTAAACCC
ATGATCTCCAACTTAATGGTTCAGGACCCTGAGAGAGAAGTGAAGGAAAGTCCGCACTGCAGGGATAGCT
TTGTATTCAGTTAA

Translation (797 aa):
MEMTLAKTPENRQVLFFTILLLLWKSCADAIIYSIPEETESGYLVANLAKDLGLRVGELAIRGARIHYKG
NKELLQLDAETGNLFLKEKPDREVLCRATEPCVLHFQIILENPVQFFQTELQLTDINDHSPEFPDRKMLL
KIPESAQPGTTFPLKAAQDPDIGSNAVQNYTVSPNLHFHVVTLSRSDGRKYPELVLDRALDREEQPELTL
ILTALDGGAPPRSGTTEVHIEVVDINDNAPQFIQSLYEVQILENSPLDALVATVSARDLDAGIYGKVAYS
LFQDDGISQPFVIDEITGEIRLKGALDFEATPYYNMEIVATDPGGFSGKCTVVIQVVDVNDNAPKLTISS
LNSSIPENAPETVVAVFSVSDPDSGENGRMVCSIQNELPFLLKSTFENYYTLVTEGTLDRESKAEYNITI
SVTDLGTPRLTTQHTITVQVSDINDNAPTFTRTSYTMFIRENNSPALHIGTISATDSDAGSNAHITYSLL
PPHDPQLTLTSLVSINEDNGQLFALRALDYEALRAFEFHVRATDRGSPALSSQALVLVVVLDDNDNEPFV
LYPLQNSSAPCKELVPRAAEAGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLS
ERDAPKHRLLLVVKDNGDPPRSASVTLHVLLVDGFSQPYLPLSEVVQDPAQEGDDALTLYLVIALASVSS
LFLISVLLFVGMKLCKRARSPSLGVCSVPEGHFPGHLVDVSGTGTLSQSYQYEVCLSGDSGTGEFKFLKP
MISNLMVQDPEREVKESPHCRDSFVFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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