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Report for CCDS29407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29407.1 Public Mus musculus 19 Tbx10 23 108 98 CCDS HistoryNCBI Gene:109575Re-query CCDS DB by CCDS ID:29407.1Re-query CCDS DB by GeneID:109575See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29407.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041871.8 ENSMUSP00000037401.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041871.8Link to Ensembl Protein Viewer:ENSMUSP00000037401.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041871Re-query CCDS DB by Protein ID:ENSMUSP00000037401
Original member Current member NCBI NM_001001320.1 NP_001001320.1 Accepted alive Link to Nucleotide Sequence:NM_001001320.1Link to Protein Sequence:NP_001001320.1Re-query CCDS DB by Nucleotide ID:NM_001001320Re-query CCDS DB by Protein ID:NP_001001320Link to BLAST:NP_001001320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001320.1 385 Q810F8-1 385 100% 0 0

Chromosomal Locations for CCDS 29407.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3993108 3993114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3996529 3996796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3996874 3996975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3997275 3997446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3997805 3997960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3998182 3998249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3998470 3998564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3998959 3999248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCAGTCTTCCTGTCTGCTGGCCTTGGGGTACTTGCTCCTCCAGAGACCTGTCCCCATCCCGAGACCA
GCACCAGCTGGGAGTCCCGGCTGGGGACACGATTCCCCTCAGGTTCCTGCACCATGTCTACAGAAGCCCA
AGCCATGGCAGAGCCCACTGGGCAGGGCCCCAAGAACCCACGTGTGTCCAGTGTGATGGTGCAGCTGGAG
ATGAAGCCACTGTGGGAAGAGTTCAACCAGCTGGGCACAGAGATGATTGTCACCAAAGCGGGCAGGAGGA
TGTTCCCAACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTCATGGACTT
TATCCCGTTGGATGACAAGAGATACAGGTACGCATTCCACAGTTCTGCCTGGCTGGTGGCAGGCAAGGCA
GACCCTGCCACGCCTGGCAGGGTGCACTTCCACCCTGACTCGCCAGCCAAGGGTGCCCAGTGGATGCGGC
AGATTGTGTCCTTTGACAAACTCAAGCTGACCAACAACCTGATGGACGACAATGGCCACATCATCCTCAA
CTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGACAGTGCCCGCTAT
GCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACC
ACAGGATCACGCAGCTGAAAATTGCTAGCAACCCCTTTGCCAAAGGTTTCAGAGAGGCTGACCCAGACTC
ATGGCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTC
CTTAAGGGCTCTGCAGAACGAGAGAAAGATACCAGTAAAGCTTCCGCTTCCAGCTCCAGGACCCCTACTC
AGCCACACAATCAGCTGCTGCCTGCCCCTGATGTCCTGCTAGCCCCTGCCACCTACAGACCCCTCCCTTA
CCAGAACCTGTACCCTGGATCCCCAAGCCGTGCTGGGCCCCCAAGAGCTCGGCTGGCACCTTACCCTCTC
CCCAACATCAGCACGGCTGGAGATCAGGAGGACCCAACCCTCGCAGCTGGGCTGGGACTCCTGCCCACCT
CTGCCTTGTGCTTGGTGTCTAATCAAGCCTCGCAGTGA

Translation (385 aa):
MAVFLSAGLGVLAPPETCPHPETSTSWESRLGTRFPSGSCTMSTEAQAMAEPTGQGPKNPRVSSVMVQLE
MKPLWEEFNQLGTEMIVTKAGRRMFPTFQVKILGMDTLADYALLMDFIPLDDKRYRYAFHSSAWLVAGKA
DPATPGRVHFHPDSPAKGAQWMRQIVSFDKLKLTNNLMDDNGHIILNSMHRYQPRFHVVFVDPRKDSARY
AQENFKSFVFTETQFTAVTAYQNHRITQLKIASNPFAKGFREADPDSWPVTPRPLLSIPARSRSSLSPCL
LKGSAEREKDTSKASASSSRTPTQPHNQLLPAPDVLLAPATYRPLPYQNLYPGSPSRAGPPRARLAPYPL
PNISTAGDQEDPTLAAGLGLLPTSALCLVSNQASQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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