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Report for CCDS29540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29540.1 Public Mus musculus 19 Slc3a2 23 108 98 CCDS HistoryNCBI Gene:17254Re-query CCDS DB by CCDS ID:29540.1Re-query CCDS DB by GeneID:17254See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010239.5 ENSMUSP00000010239.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010239.5Link to Ensembl Protein Viewer:ENSMUSP00000010239.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000010239Re-query CCDS DB by Protein ID:ENSMUSP00000010239
Original member NCBI NM_008577.4 NP_032603.3 Updated not alive Link to Nucleotide Sequence:NM_008577.4Link to Protein Sequence:NP_032603.3Re-query CCDS DB by Nucleotide ID:NM_008577Re-query CCDS DB by Protein ID:NP_032603
Current member NCBI NM_008577.5 NP_032603.3 Accepted alive Link to Nucleotide Sequence:NM_008577.5Link to Protein Sequence:NP_032603.3Re-query CCDS DB by Nucleotide ID:NM_008577Re-query CCDS DB by Protein ID:NP_032603Link to BLAST:NP_032603.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032603.3 526 P10852-1 526 100% 0 0

Chromosomal Locations for CCDS 29540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8707723 8708094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8708194 8708277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8709005 8709145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8709230 8709410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8709550 8709608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8709715 8709783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8711834 8711928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8712730 8712903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8713342 8713747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCA
TGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGA
GACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGC
TGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCG
TGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCT
CTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTGGTCTGAAGAGCCAT
CTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAATTCACAAGAACCAGAAGGATG
AAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCT
ACAAAGTGCCAAGAAAAAGAGCATTCACATCATTTTGGACCTCACTCCCAACTACCAGGGCCAGAATGCG
TGGTTCCTCCCTGCTCAGGCTGACATTGTAGCCACCAAAATGAAGGAAGCTCTGAGTTCTTGGTTGCAGG
ACGGTGTGGATGGTTTCCAATTCCGGGATGTGGGAAAGCTGATGAATGCACCCTTGTACTTGGCTGAGTG
GCAGAATATCACCAAGAACTTAAGTGAGGACAGGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAG
CAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTT
TCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTG
GAGTGTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTG
CTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTG
GACAGCCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAG
CCTCAACATGACAGTGAAGGGCCAGAATGAAGACCCTGGCTCCCTCCTTACCCAGTTCCGGCGGCTGAGT
GACCTTCGGGGTAAGGAGCGCTCTCTGTTGCACGGTGACTTCCATGCACTGTCTTCCTCACCTGACCTCT
TCTCCTACATACGACACTGGGACCAGAATGAGCGTTACCTGGTGGTGCTCAACTTCCGAGATTCGGGCCG
GTCAGCCAGGCTAGGGGCCTCCAACCTCCCTGCTGGCATAAGCCTGCCAGCCAGCGCTAAACTTTTGCTT
AGTACCGACAGTGCCCGGCAAAGCCGTGAGGAGGACACCTCCCTGAAGCTGGAAAACCTGAGCCTGAATC
CTTATGAGGGCTTGCTGTTACAGTTCCCCTTTGTGGCCTGA

Translation (526 aa):
MSQDTEVDMKDVELNELEPEKQPMNAADGAAAGEKNGLVKIKVAEDETEAGVKFTGLSKEELLKVAGSPG
WVRTRWALLLLFWLGWLGMLAGAVVIIVRAPRCRELPVQRWWHKGALYRIGDLQAFVGRDAGGIAGLKSH
LEYLSTLKVKGLVLGPIHKNQKDEINETDLKQINPTLGSQEDFKDLLQSAKKKSIHIILDLTPNYQGQNA
WFLPAQADIVATKMKEALSSWLQDGVDGFQFRDVGKLMNAPLYLAEWQNITKNLSEDRLLIAGTESSDLQ
QIVNILESTSDLLLTSSYLSNSTFTGERTESLVTRFLNATGSQWCSWSVSQAGLLADFIPDHLLRLYQLL
LFTLPGTPVFSYGDELGLQGALPGQPAKAPLMPWNESSIFHIPRPVSLNMTVKGQNEDPGSLLTQFRRLS
DLRGKERSLLHGDFHALSSSPDLFSYIRHWDQNERYLVVLNFRDSGRSARLGASNLPAGISLPASAKLLL
STDSARQSREEDTSLKLENLSLNPYEGLLLQFPFVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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