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Report for CCDS29561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29561.1 Public Mus musculus 19 Mta2 23 108 98 CCDS HistoryNCBI Gene:23942Re-query CCDS DB by CCDS ID:29561.1Re-query CCDS DB by GeneID:23942See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096240.2 ENSMUSP00000093959.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096240.2Link to Ensembl Protein Viewer:ENSMUSP00000093959.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000096240Re-query CCDS DB by Protein ID:ENSMUSP00000093959
Original member NCBI NM_011842.3 NP_035972.3 Updated not alive Link to Nucleotide Sequence:NM_011842.3Link to Protein Sequence:NP_035972.3Re-query CCDS DB by Nucleotide ID:NM_011842Re-query CCDS DB by Protein ID:NP_035972
Current member NCBI NM_011842.4 NP_035972.3 Accepted alive Link to Nucleotide Sequence:NM_011842.4Link to Protein Sequence:NP_035972.3Re-query CCDS DB by Nucleotide ID:NM_011842Re-query CCDS DB by Protein ID:NP_035972Link to BLAST:NP_035972.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035972.3 668 Q9R190 668 100% 0 0

Chromosomal Locations for CCDS 29561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8942355 8942382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8943465 8943532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8944013 8944106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8945756 8945873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8946006 8946069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8946267 8946384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8946648 8946750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8947037 8947136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8947252 8947440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8947525 8947599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8947727 8947785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8948025 8948122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8948257 8948396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8948951 8949179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8950300 8950389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8950912 8951030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8951136 8951284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8951490 8951655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGGCGGCTAACATGTACCGGGTGGGAGATTACGTCTATTTTGAGAACTCCTCCAGCAATCCTTACCTGG
TTAGACGGATTGAGGAGCTCAATAAGACTGCAAATGGAAATGTGGAAGCAAAGGTTGTCTGTCTTTTCCG
GCGAAGGGATATTTCTAGTAGCCTCAACAGCTTGGCTGACAGTAATGCTCGGGAGTTTGAGGAGGAATCA
AAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGT
TTGAATCATTACCAGCCACCCACATAAGGGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTT
AAACCAGTATCTAGACAAGGAGGACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTT
CTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG
GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGA
CCGGCAGATTGATCAGTTTCTCGTGGTGGCCCGAGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGC
AGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTGTTCCATG
CCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGG
CCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTG
GAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTTCTACCCTGGAAGTCACTTGCAAGCATAG
TCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGAAAAGATTGAAAGCTGCTGAAGC
AGACAGCAAACTGAAACAGGTCTACATCCCCACTTATACCAAGCCAAACCCTAACCAGATCATTTCTGTG
GGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACACCACAC
AGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTA
TTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACAGAGCCA
CACTCAAGAGGTCATTTATCCAGACCTGAAGCCCAAAGTCTCTCCCCCTATACAACCAGTGCTAACCGGG
CCAAGTTGCTGGCTAAGAACAGGCAAACTTTCTTGCTCCAGACCACAAAGCTAACTCGTCTAGCCAGACG
AATGTGCCGAGATCTATTACAGCCAAGGAGGGCTGCCCGAAGACCCTATGCACCTATCAATGCCAATGCC
ATCAAGGCAGAGTGCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGC
GGCTGCCCTTGGCAACTATCGTCAAAGATCTGGTGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGG
TACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGT
TCCTATGAGACTATGGCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTC
GTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATT
TGTGGCCACAAAGGACACCAGGGCTTTAAGGAAAGCTCTAACTCACCTGGAAATGCGCCGAGCGGCCCGA
AGGCCCAACCTACCCCTGAAGGTGAAACCAACGCTGATGACAGTGCGGCCCCCAGTTCCTCTGCCCGCTT
CTTCACATCCTGCCAGCACCAATGAGCCCATTGTCCTGGAGGATTGA

Translation (668 aa):
MAANMYRVGDYVYFENSSSNPYLVRRIEELNKTANGNVEAKVVCLFRRRDISSSLNSLADSNAREFEEES
KQPGVSEQQRHQLKHRELFLSRQFESLPATHIRGKCSVTLLNETDILNQYLDKEDCFFYSLVFDPVQKTL
LADQGEIRVGCKFQAEIPDRLAEGESDNRNQQKMEMKVWDPDNPLTDRQIDQFLVVARAVGTFARALDCS
SSIRQPSLHMSAAAASRDITLFHAMDTLQRNGYDLAKAMSTLVPQGGPVLCRDEMEEWSASEAMLFEEAL
EKYGKDFNDIRQDFLPWKSLASIVQFYYMWKTTDRYIQQKRLKAAEADSKLKQVYIPTYTKPNPNQIISV
GSKPGMNGAGFQKGLTCESCHTTQSAQWYAWGPPNMQCRLCASCWIYWKKYGGLKTPTQLEGAARGTTEP
HSRGHLSRPEAQSLSPYTTSANRAKLLAKNRQTFLLQTTKLTRLARRMCRDLLQPRRAARRPYAPINANA
IKAECSIRLPKAAKTPLKIHPLVRLPLATIVKDLVAQAPLKPKTPRGTKTPINRNQLTQNRGLGGIMVKR
SYETMAGAGVPFSANGRPLASGIRSSSQPAAKRQKLNPADAPNPVVFVATKDTRALRKALTHLEMRRAAR
RPNLPLKVKPTLMTVRPPVPLPASSHPASTNEPIVLED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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