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Report for CCDS29806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29806.1 Public Mus musculus 19 Ccnj 23 108 98 CCDS HistoryNCBI Gene:240665Re-query CCDS DB by CCDS ID:29806.1Re-query CCDS DB by GeneID:240665See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025983.12 ENSMUSP00000025983.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025983.12Link to Ensembl Protein Viewer:ENSMUSP00000025983.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025983Re-query CCDS DB by Protein ID:ENSMUSP00000025983
Original member Current member EBI ENSMUST00000119316.1 ENSMUSP00000112643.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119316.1Link to Ensembl Protein Viewer:ENSMUSP00000112643.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119316Re-query CCDS DB by Protein ID:ENSMUSP00000112643
Original member Current member NCBI NM_172839.4 NP_766427.1 Accepted alive Link to Nucleotide Sequence:NM_172839.4Link to Protein Sequence:NP_766427.1Re-query CCDS DB by Nucleotide ID:NM_172839Re-query CCDS DB by Protein ID:NP_766427Link to BLAST:NP_766427.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766427.1 379 Q3TZI6-1 379 100% 0 0

Chromosomal Locations for CCDS 29806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40832020 40832088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40836917 40837127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40844660 40844959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40845045 40845204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40845699 40846098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGAGCTGGAGGGGCAGTGGTGGCGAGGACAGCTGGCTGCGGATATTCACCAGGCGCTTCGGTACAAGG
AGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGAT
TGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTG
TTCATGGACCGCTATGACATCTCCATTCAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA
GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAA
CATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGG
AACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACC
TTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTT
CCTGGAAGTGTCTCTGCAAGATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTG
GCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACT
CCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCTTGCTCACGATAACGACGTGAAAGAAGCAAA
CAAGCAGAGGGGACAGTCAGCTCCCCAGTCGACACAGCTGACTGTGTTCCAGACAGCGCAGCCCTCCCGG
CCGGTTCACTTCCAGCAGCCTCAGTATCTCCATCAGAGCTCCCTGCAGTACCGGCATCCTGTGTCAGAAC
AGCCCAGCCGTCAGCAGATTGTGTCTACCACACACACCTCGTCTTACACGCTACAGACTTGTCCCGCGGG
CTTCCAAACGAGCGTTCAGGGCCTTGGCCACATGCAGACTGGTGTTGGGATGTCCCTGGCAATACCAGTA
GAAGTTAAACCCTGCCTCAGTGTTTCTTATAACCGGAGTTACCAGATAAACGAACATTTCCCGTGTATTA
CCCCATGCTTTGAGAGGTGA

Translation (379 aa):
MELEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLNLRRYFADLIAIVSNRFTLCPPARHLAVYLLDL
FMDRYDISIQQLHLVALSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQTLLHMELLLLETFQW
NLCLPTAAHFIEYYLSEAVHETDLHDGWPMVCLEKTKLYMAKYADYFLEVSLQDYAFLNYAPSLVAAACV
ASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLLAHDNDVKEANKQRGQSAPQSTQLTVFQTAQPSR
PVHFQQPQYLHQSSLQYRHPVSEQPSRQQIVSTTHTSSYTLQTCPAGFQTSVQGLGHMQTGVGMSLAIPV
EVKPCLSVSYNRSYQINEHFPCITPCFER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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