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Report for CCDS29815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29815.1 Public Mus musculus 19 Pgam1 23 108 98 CCDS HistoryNCBI Gene:18648Re-query CCDS DB by CCDS ID:29815.1Re-query CCDS DB by GeneID:18648See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011896.7 ENSMUSP00000011896.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011896.7Link to Ensembl Protein Viewer:ENSMUSP00000011896.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000011896Re-query CCDS DB by Protein ID:ENSMUSP00000011896
Original member Current member NCBI NM_023418.2 NP_075907.2 Accepted alive Link to Nucleotide Sequence:NM_023418.2Link to Protein Sequence:NP_075907.2Re-query CCDS DB by Nucleotide ID:NM_023418Re-query CCDS DB by Protein ID:NP_075907Link to BLAST:NP_075907.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075907.2 254 Q9DBJ1 254 100% 0 0

Chromosomal Locations for CCDS 29815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41912048 41912186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41915605 41915879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41916643 41916823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41917606 41917775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGCTGCCTACAAGCTGGTGCTGATCCGGCATGGCGAGAGCGCCTGGAACCTGGAGAACCGCTTCAGCG
GCTGGTACGACGCCGACCTGAGCCCGGCGGGCCACGAGGAGGCGAAGCGCGGCGGGCAGGCGTTGCGAGA
TGCTGGCTATGAATTTGACATCTGCTTCACCTCTGTGCAGAAGAGAGCAATCCGGACCCTCTGGACAGTC
CTGGATGCCATTGACCAGATGTGGTTGCCAGTGGTCAGGACTTGGCGCCTCAATGAGCGACACTATGGCG
GTCTGACAGGTCTCAACAAAGCAGAAACTGCTGCTAAGCATGGTGAGGCCCAGGTAAAGATCTGGAGACG
ATCTTATGATGTCCCACCGCCTCCCATGGAGCCTGATCACCCCTTCTACAGCAACATCAGCAAGGATCGC
AGGTACGCAGACCTTACTGAAGACCAGCTCCCCTCCTGTGAGAGCCTGAAGGACACTATTGCCAGAGCAC
TGCCCTTCTGGAATGAAGAAATTGTCCCCCAGATCAAAGAGGGGAAAAGGGTCTTGATTGCCGCCCACGG
CAACAGCCTTCGGGGCATCGTTAAGCATCTGGAGGGTCTCTCAGAAGAGGCCATCATGGAGCTGAACCTG
CCCACGGGCATCCCTATCGTCTATGAACTGGACAAGAACTTGAAGCCCATCAAGCCCATGCAGTTCCTGG
GAGACGAGGAGACCGTGCGCAAAGCCATGGAAGCTGTGGCTGCTCAGGGCAAGGTGAAGAAGTGA

Translation (254 aa):
MAAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTV
LDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDR
RYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNL
PTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKVKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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