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Report for CCDS29878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29878.1 Public Mus musculus 19 Actr1a 23 108 98 CCDS HistoryNCBI Gene:54130Re-query CCDS DB by CCDS ID:29878.1Re-query CCDS DB by GeneID:54130See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040270.5 ENSMUSP00000039844.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040270.5Link to Ensembl Protein Viewer:ENSMUSP00000039844.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040270Re-query CCDS DB by Protein ID:ENSMUSP00000039844
Original member Current member NCBI NM_016860.2 NP_058556.1 Accepted alive Link to Nucleotide Sequence:NM_016860.2Link to Protein Sequence:NP_058556.1Re-query CCDS DB by Nucleotide ID:NM_016860Re-query CCDS DB by Protein ID:NP_058556Link to BLAST:NP_058556.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058556.1 376 P61164 376 100% 0 0

Chromosomal Locations for CCDS 29878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46378367 46378469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46378608 46378648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46379413 46379474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46379582 46379756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46380249 46380341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46380917 46381133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46382294 46382418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46384220 46384345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46385013 46385088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46387452 46387516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46395630 46395677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGAGTCCTACGATGTGATCGCCAACCAGCCTGTTGTGATCGACAACGGATCCGGTGTGATTAAAGCTG
GCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTATGTGGGCAGACCCAAACATGTTCGTGT
CATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAGGAGCACCGGGGGCTGCTGTCA
ATCCGTTACCCCATGGAACATGGCATCGTCAAGGACTGGAACGACATGGAACGCATCTGGCAATACGTCT
ACTCTAAGGACCAGCTGCAGACTTTCTCAGAGGAGCATCCTGTGCTCCTAACGGAGGCACCTTTAAACCC
TCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCC
ATGCAAGCCGTGCTGAGCCTTTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTG
TCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGG
CCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAG
TTTGAGATTGTCAAGGCCATAAAGGAAAGAGCTTGCTACCTGTCCATAAACCCCCAGAAGGATGAGACAC
TGGAGACAGAGAAGGCTCAGTACTACCTGCCCGATGGCAGCACCATTGAGATTGGCCCTTCCCGGTTCCG
GGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTG
TTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTT
CTACCCTGTTCAAAGGTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAA
GATCAGGATATCTGCACCCCAGGAGAGACTGTATTCCACATGGATTGGAGGTTCTATCCTTGCTTCCCTG
GACACCTTTAAGAAGATGTGGGTCTCTAAGAAAGAATATGAAGAAGACGGTGCCCGATCCATCCACAGGA
AAACCTTCTAA

Translation (376 aa):
MESYDVIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGPKAEEHRGLLS
IRYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKNRERAAEVFFETFNVPALFIS
MQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVSRFLRLYLRKEGYDFHSSSE
FEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLV
FAIQKSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASL
DTFKKMWVSKKEYEEDGARSIHRKTF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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