NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29908.1 Public Mus musculus 19 Acsl5 23 108 98 CCDS HistoryNCBI Gene:433256Re-query CCDS DB by CCDS ID:29908.1Re-query CCDS DB by GeneID:433256See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29908.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043150.5 ENSMUSP00000046585.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043150.5Link to Ensembl Protein Viewer:ENSMUSP00000046585.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043150Re-query CCDS DB by Protein ID:ENSMUSP00000046585
Original member Current member NCBI NM_027976.2 NP_082252.1 Accepted alive Link to Nucleotide Sequence:NM_027976.2Link to Protein Sequence:NP_082252.1Re-query CCDS DB by Nucleotide ID:NM_027976Re-query CCDS DB by Protein ID:NP_082252Link to BLAST:NP_082252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082252.1 683 Q8JZR0 683 100% 0 0

Chromosomal Locations for CCDS 29908.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55268673 55268828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55272769 55272877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55277907 55277971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55278081 55278182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55279464 55279563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55280441 55280619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55281336 55281368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55281450 55281501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55282473 55282546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55283308 55283385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55284403 55284537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55287828 55287962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55288805 55288900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55291146 55291218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55291418 55291506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55291773 55291889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55293587 55293730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55294202 55294303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55294833 55294904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55295373 55295513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGCTTTTTATTTTTAACTTCTTGTTTTCCCCACTTCCAACTCCGGCCCTGATCTGCCTCCTGACGTTTG
GAACGGCCATCTTCCTGTGGCTGATCAACAGACCTCAGCCAGTTTTACCTCTCATTGACTTGGACAACCA
GTCTGTGGGGATTGAGGGAGGAGCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTAC
TTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTGACAATGGGCCTTGCT
TGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAGGTGTCTGATCGAGCAGAGTA
CCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAA
AATAGGCCAGAGTGGGTCATCTCTGAGTTAGCCTGTTACACATATTCCATGGTAGCTGTCCCCCTGTATG
ACACGCTGGGTACAGAAGCCATCATCTTTGTCATCAACAGGGCTGATATCCCTGTGGTCATCTGTGATAC
ACCCCAAAAGGCAACAATGCTAGTAGAAAATGTGGAAAAGGGCCTCACACCAGGCCTGAAGACGATCATC
CTCATGGACCCTTTTGATGACGACCTGATGAAAAGAGGAGAAAAGTGTGGAGTTGAGATGTTATCCCTGC
ATGATGCGGAGAATATAGGCAAAGAGAACTTCAAAAAACCAGTGCCTCCGAAGCCAGAGGATCTGAGCGT
CATCTGTTTCACCAGTGGAACTACAGGTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCA
AACATGGCTGCTTTCCTCAAATTTCTGGAGCCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCT
ACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAGGGTATCTTATTTTCCTGTGGAGGCAAAATTGG
GTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACA
GTGCCTCGACTCCTTAACAGGGTCTATGATAAGGTACAAAATGAAGCCAAGACACCTTTGAAGAAGTTCT
TGTTGAACTTGGCTATCATCAGTAAATTCAATGAAGTGAAAAATGGCATCATTCGGCGGGACAGTTTGTG
GGACAAGCTCGTGTTTTCAAAGATTCAAGGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCC
GCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGGGTGTTTGAAGCTTATG
GCCAAACAGAATGCACAGGTGGATGTTCAATTACATCACCTGGGGACTGGACAGCAGGTCATGTTGGGAC
TCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAA
GGCGAGATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAG
TACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCAAATGGAACTCTGAAAAT
TGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAAT
GTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGGTCATTCCTGATCG
GAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGA
AGAACTGTGCAAAAACCAATGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGT
GGCCTGAAATCCTTTGAGCAGGTCAAAAGTATCTTTGTGCATCCAGAGCCCTTCACTATTGAAAACGGAC
TTCTGACACCGACACTGAAAGCCAAACGAGTAGAGCTTGCCAAGTTCTTCCAGACACAAATCAAGAGCCT
CTATGAGAGCATCGAGGAGTAG

Translation (683 aa):
MLFIFNFLFSPLPTPALICLLTFGTAIFLWLINRPQPVLPLIDLDNQSVGIEGGARRGAFQKNNDLILYY
FSDAKTLYENFQRGLAVSDNGPCLGYRKPNQPYKWISYKQVSDRAEYLGSCLLHKGYKSSQDQFVGIFAQ
NRPEWVISELACYTYSMVAVPLYDTLGTEAIIFVINRADIPVVICDTPQKATMLVENVEKGLTPGLKTII
LMDPFDDDLMKRGEKCGVEMLSLHDAENIGKENFKKPVPPKPEDLSVICFTSGTTGDPKGAMLTHENVVS
NMAAFLKFLEPIFQPTSDDVTISYLPLAHMFERLVQGILFSCGGKIGFFQGDIRLLPDDMKALKPTVFPT
VPRLLNRVYDKVQNEAKTPLKKFLLNLAIISKFNEVKNGIIRRDSLWDKLVFSKIQGSLGGKVRLMITGA
APISTPVLTFFRAAMGCWVFEAYGQTECTGGCSITSPGDWTAGHVGTPVACNFVKLEDVADMNYFSVNNE
GEICIKGNNVFKGYLKDPEKTQEVLDKDGWLHTGDIGRWLPNGTLKIVDRKKNIFKLAQGEYIAPEKIEN
VYSRSRPVLQVFVHGESLRSFLIGVVVPDPDSLPSFAAKIGVKGSFEELCKNQCVKEAILEDLQKIGKEG
GLKSFEQVKSIFVHPEPFTIENGLLTPTLKAKRVELAKFFQTQIKSLYESIEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH