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Report for CCDS29926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29926.1 Public Mus musculus 19 Trub1 23 108 98 CCDS HistoryNCBI Gene:72133Re-query CCDS DB by CCDS ID:29926.1Re-query CCDS DB by GeneID:72133See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29926.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026073.13 ENSMUSP00000026073.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026073.13Link to Ensembl Protein Viewer:ENSMUSP00000026073.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026073Re-query CCDS DB by Protein ID:ENSMUSP00000026073
Original member Current member NCBI NM_028115.3 NP_082391.1 Accepted alive Link to Nucleotide Sequence:NM_028115.3Link to Protein Sequence:NP_082391.1Re-query CCDS DB by Nucleotide ID:NM_028115Re-query CCDS DB by Protein ID:NP_082391Link to BLAST:NP_082391.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082391.1 338 Q8C0D0-1 338 100% 0 0

Chromosomal Locations for CCDS 29926.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57452947 57453196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57458090 57458188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57464370 57464425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57472699 57472780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57483581 57483653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57485073 57485212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57487265 57487321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57488009 57488268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCAGCTGCAGAGGCAGAGGTGGTTTCACCTCTGATTGTGGACACAGCTCCTGACACTTCAGGAACAG
CCGAGGCCTCTGTAGCAGCATCGGTGGCGGAAGCGGCCAGGACTGAATCGCAAGCCCCGGCCTCCAAGGC
CGCCCTGGCTGCTAAGCTCATGTCGCTGAGCGGCGTGTTCGCCGTGCACAAGCCCAAAGGGCCCACTTCA
GCCGAGCTGCTGAACCGGCTGAAGGAGAAGCTGCTGGCAGAAGCTGGAATGCCTTCTCCAGAATGGAACA
AGAGGCAAAAGCAGACATTGAAAGTCGGACACGGAGGGACGCTGGACAGTGCAGCGCAAGGTGTTCTGGT
GGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAGAGGTATATCACCATC
GGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATGATA
AAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT
CTATTCTGCGCTGAAGAAGGATGGGCAGAGACTCTCAACGCTAATGAAGAAAGGCAAGGTGGTGGAGGCC
AGACCGGCCCGGCCCGTGACTGTCCACAGTATCTCCCTCCTGAAGTTCCAGCCTCCGTTCTTCACGCTGG
ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAGAGCTCTCTTCCTG
TGCCAGCGTGCTGGAGCTGACCCGCACCAAACAGGGGCCCTTCACACTTGCACAGCACGCCCTCCCCGAA
GACAGGTGGACCATCGATGACATCGAACAGTCCCTCGAGCGCTGCACGTCTCTTCTGCCGGAGGAGCTGA
CATTTAAAAAACTAAAATCTGACAACTCCAGTGACCAGGTTATAAGCTGTGGATATATAACTCTCAGGGA
CACAAAGAGAGAAGATGACGCAGTTAAGACACTGTGA

Translation (338 aa):
MAAAEAEVVSPLIVDTAPDTSGTAEASVAASVAEAARTESQAPASKAALAAKLMSLSGVFAVHKPKGPTS
AELLNRLKEKLLAEAGMPSPEWNKRQKQTLKVGHGGTLDSAAQGVLVVGIGRGTKMLTSMLSGSKRYITI
GELGKATDTLDSTGKVTEEKPYDKITREDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKKGKVVEA
RPARPVTVHSISLLKFQPPFFTLDVECGGGFYIRSLVSDIGKELSSCASVLELTRTKQGPFTLAQHALPE
DRWTIDDIEQSLERCTSLLPEELTFKKLKSDNSSDQVISCGYITLRDTKREDDAVKTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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