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Report for CCDS29939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29939.1 Public Mus musculus 19 Fam204a 23 108 98 CCDS HistoryNCBI Gene:76539Re-query CCDS DB by CCDS ID:29939.1Re-query CCDS DB by GeneID:76539See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29939.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065286.1 ENSMUSP00000063913.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065286.1Link to Ensembl Protein Viewer:ENSMUSP00000063913.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000065286Re-query CCDS DB by Protein ID:ENSMUSP00000063913
Original member Current member EBI ENSMUST00000238054.1 ENSMUSP00000158259.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238054.1Link to Ensembl Protein Viewer:ENSMUSP00000158259.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238054Re-query CCDS DB by Protein ID:ENSMUSP00000158259
Original member Current member NCBI NM_001358273.1 NP_001345202.1 Accepted alive Link to Nucleotide Sequence:NM_001358273.1Link to Protein Sequence:NP_001345202.1Re-query CCDS DB by Nucleotide ID:NM_001358273Re-query CCDS DB by Protein ID:NP_001345202Link to BLAST:NP_001345202.1
Original member Current member NCBI NM_029648.7 NP_083924.2 Accepted alive Link to Nucleotide Sequence:NM_029648.7Link to Protein Sequence:NP_083924.2Re-query CCDS DB by Nucleotide ID:NM_029648Re-query CCDS DB by Protein ID:NP_083924Link to BLAST:NP_083924.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345202.1 236 Q8C6C7 236 100% 0 0
NP_083924.2 236 Q8C6C7 236 100% 0 0

Chromosomal Locations for CCDS 29939.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 60199436 60199487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60199970 60200076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60212673 60212762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60220040 60220139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60220330 60220360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60220490 60220577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60221054 60221296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGTGGAGTGGGCTGTTACCTCCTGGACTAAATGAAAGTGATGTTGAATCAGATTCTGAGGATGAAATCA
AACTAGAGAACCCAGAACCTTCAGAACATAATTTACAGGAAGATGGAAAGACTGGCAGCAGTACGAAGCC
AGCAGTGTCAGACTTCCCGACAGGCCAGCCAGAGACGGAGACAGAGGCTGATGCGGATGCATATGAGAAG
TGTCCTTCTGGGATTCCCTTAAACATATGGAATAAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGA
AAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGCAAATTGAAGAATGAAAA
GGAATCTCACAGTGAGCAGTCCTCAAATGAGACCCAGTGGGAAGAGCTTACTCAGTATTTTGGAGCCAAT
GATAGATTTGAACCCCCTGTTAAACAGAAAAAAGTTGAGAAGTCAGGCCTTGAGAAGAGGATTGACCAGG
CTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAGCTCGGTGT
AAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCT
GCTCGAAAGAAGAAGAAACTGGCATGGGGGTTTGAAGCAAAGAAGAGATGGGAAACCAAAAGCAACATGG
GATATATGTGA

Translation (236 aa):
MWSGLLPPGLNESDVESDSEDEIKLENPEPSEHNLQEDGKTGSSTKPAVSDFPTGQPETETEADADAYEK
CPSGIPLNIWNKFQELHKKNSEQKNSTPRFRQKKRKRSKKGKLKNEKESHSEQSSNETQWEELTQYFGAN
DRFEPPVKQKKVEKSGLEKRIDQAVEEWDVEKAEELSNQLATRELGVKIAKAIACHKFVKAKKEAENSQA
ARKKKKLAWGFEAKKRWETKSNMGYM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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