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Report for CCDS29966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29966.1 Public Mus musculus X Ccdc22 23 108 98 CCDS HistoryNCBI Gene:54638Re-query CCDS DB by CCDS ID:29966.1Re-query CCDS DB by GeneID:54638See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033483.4 ENSMUSP00000033483.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033483.4Link to Ensembl Protein Viewer:ENSMUSP00000033483.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033483Re-query CCDS DB by Protein ID:ENSMUSP00000033483
Original member Current member NCBI NM_138603.3 NP_613069.3 Accepted alive Link to Nucleotide Sequence:NM_138603.3Link to Protein Sequence:NP_613069.3Re-query CCDS DB by Nucleotide ID:NM_138603Re-query CCDS DB by Protein ID:NP_613069Link to BLAST:NP_613069.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613069.3 627 Q9JIG7 627 100% 0 0

Chromosomal Locations for CCDS 29966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7594054 7594167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7594530 7594604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7594684 7594743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7594960 7595055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7595296 7595403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7595486 7595587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7595705 7595821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7595903 7596022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7596494 7596613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7596731 7596793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7597538 7597732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7599158 7599336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7599434 7599500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7599629 7599735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7600621 7600753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7604160 7604337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7605244 7605293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGGAGGAGGCTGACCGAATCCTCATCCATTCCTTGCGCCAGGCGGGCACGGCAGTTCCTCCAGAAGTGC
AGACTCTGCGAGCTTTCACCACTGAGCTGGTCGTAGAGGCTGTGGTCCGATGCCTTCGAGTGATTAATCC
TGATGTGGGCTCTGGCCTCAGTCACTTGCTACCACCAGCCATGTCTGCCCGCTTCCGCCTGGCCATGAGT
CTGGCCCAGGCCTGCATGGACCTGGGCTATCCCTTGGAGCTTGGCTATCAGAACTTCCTCTATCCCAGTG
AGCCTGACCTTCGAGATCTGCTTCTTTTCTTGGCTGAGCGACTACCCAGCGATGCCTCTGAGGACGCAGA
CCAGCCTGCAGGTGACTCGGCTATTTTCCTTCGGGCCATTGGGAGCCAAATCCGGGACCAGCTGGCCCTG
CCCTGGGTCCCACCTCTCCTTCGAACTCCCAAGGTGCAGCGCCTCCAGGGCTCAGCCCTCCAGCAGCCGT
TCCACTCCAGCAGGTTGGTTCTACCTGAGTTGAATTCCAGCGGAGAGCTATGGGAGTTCCAGGCCAGTCC
CCTGCTGCTACCAGCCCCCACACAGGTGCCCCAGCTTCAGGGGAGGGCAGCCTCACTCCTTGAACACCAT
GCCAGCCAGCTCTGCCAGCATGTGAACAGGGATTGCCCAGGAGATGAAGACCGGGTGCGCTGGGCATCCC
GCGTCCCATCCCAGGAGGATTCCCGGGCTCCACAGCAGAGACTGCACAAGCAGCTGATTGAACATCTGCG
TCAAAGCTGGGGCCCACTTGGAGCCCCGACACAAGTCCGAGACCTAGGAGAGATGCTGCAGACCTGGGGT
GCTAGGGCTATGACTGGTGTGCCCAAAGGCTCCCGCTTCACCCATTCAGAGAAGTTTACCTTCCATCTGG
AGCCCCAGGTCCAGGCAGCTCAGGTGGCAGATGTACCAGCTACCTCTCAAAGGCTTGAACAGGACACACG
GGCAGCTCAAGAGCAGGAGTTAGAGTCCCTTCGTGAGCAGCTGGCGAGTGTGAACCACAACATTGAAGAG
GTTGAAGCTGACATGAAGACCCTGGGAATCAACCTTGTGCAGGTGGAAACCGAGTGCCGACAAAGTGAAC
TCAGTGTGGCCGAGCAGGAGCAGGCCCTGCGCCTGAAGAGCAGGACGGTGGAATTGCTGCCTGATGGGGC
TGCCAACCTCGCCAAACTGCAGCTTGTGGTGGAGAGCAGCGCTCAGAGGCTCATCCATCTAGCAAGCCAG
TGGGAGAAACACCGGGTCCCACTTCTTGCTGAGTACCGCCACCTCAGAAGACTCCAGGACTGTAGGGAGC
TGGAATCGTCTCGACGGCTGGCAGAAATCCAGGAGCTGCACCACAGTGTTCGAGCAGCTGCAGAGGAGGC
TCGCCGGAAGGAGGAGGTCTATAAGCAGCTGGTGTCAGAGCTGGAGACTCTGCCAAAAGATGTGTCCCGG
CTGGCCTATACTCAGCGCATCCTGGAGATTGTGGGCAACATCCGGAAGCAGAAGGAAGAGATCACTAAGA
TCTTGTCGGACACAAAGGAACTGCAGAAGGAAATCAACTCTCTCTCTGGGAAGCTCGACCGGACATTTGC
AGTGACTGATGAGCTTGTGTTCAAGGATGCTAAGAAGGATGATGCTGTTCGGAAAGCCTACAAGTACCTA
GCTGCCCTGCATGAGAATTGCAGTCAGCTCATCCAGACCATTGAGGACACAGGCACTATCATGAGGGAAG
TTCGAGATCTTGAGGAGCAGATTGAGACAGAGATGGGCAAGAAGACTTTGAGCAACCTGGAGAAGATCTG
TGAGGACTACCGAGCCCTTCGCCAGGAGAATGCTGGCCTCTTGGGCCGGGTCCGAGAGGCCTAG

Translation (627 aa):
MEEADRILIHSLRQAGTAVPPEVQTLRAFTTELVVEAVVRCLRVINPDVGSGLSHLLPPAMSARFRLAMS
LAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPSDASEDADQPAGDSAIFLRAIGSQIRDQLAL
PWVPPLLRTPKVQRLQGSALQQPFHSSRLVLPELNSSGELWEFQASPLLLPAPTQVPQLQGRAASLLEHH
ASQLCQHVNRDCPGDEDRVRWASRVPSQEDSRAPQQRLHKQLIEHLRQSWGPLGAPTQVRDLGEMLQTWG
ARAMTGVPKGSRFTHSEKFTFHLEPQVQAAQVADVPATSQRLEQDTRAAQEQELESLREQLASVNHNIEE
VEADMKTLGINLVQVETECRQSELSVAEQEQALRLKSRTVELLPDGAANLAKLQLVVESSAQRLIHLASQ
WEKHRVPLLAEYRHLRRLQDCRELESSRRLAEIQELHHSVRAAAEEARRKEEVYKQLVSELETLPKDVSR
LAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTFAVTDELVFKDAKKDDAVRKAYKYL
AALHENCSQLIQTIEDTGTIMREVRDLEEQIETEMGKKTLSNLEKICEDYRALRQENAGLLGRVREA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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