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Report for CCDS29990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29990.1 Public Mus musculus X Porcn 23 108 98 CCDS HistoryNCBI Gene:53627Re-query CCDS DB by CCDS ID:29990.1Re-query CCDS DB by GeneID:53627See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089402.9 ENSMUSP00000086824.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089402.9Link to Ensembl Protein Viewer:ENSMUSP00000086824.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089402Re-query CCDS DB by Protein ID:ENSMUSP00000086824
Original member Current member NCBI NM_016913.4 NP_058609.1 Accepted alive Link to Nucleotide Sequence:NM_016913.4Link to Protein Sequence:NP_058609.1Re-query CCDS DB by Nucleotide ID:NM_016913Re-query CCDS DB by Protein ID:NP_058609Link to BLAST:NP_058609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058609.1 450 Q9JJJ7-4 450 100% 0 0

Chromosomal Locations for CCDS 29990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8194176 8194277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8197975 8198085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8199067 8199152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8199231 8199294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8199386 8199462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8201176 8201276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8201444 8201569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8203159 8203289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8203369 8203550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8203792 8203835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8204196 8204388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8205565 8205700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGCCACCTTCAGCCGCCAGGAATTTTTCCAGCAGCTACTGCAGGGCTGTCTCCTGCCTACTGTCCAAC
AGGGCCTTGACCAGATCTGGCTGCTTCTTACCATCTGCTTCGCCTGCCGCCTCCTTTGGAGGCTGGGGTT
ACCGTCTTACCTGAAGCATGCAAGCACCGTGGCAGGTGGCTTCTTCAGCCTCTACCACTTCTTCCAGCTG
CACATGGTTTGGGTCGTGCTGCTGAGCCTCCTGTGCTACCTCGTGCTGTTCCTCTGCCGACACTCCTCCC
ACCGAGGCGTCTTCCTCTCCGTCACCATCCTCATCTACCTGCTCATGGGTGAGATGCACATGGTGGACAC
CGTGACATGGCACAAGATGCGAGGGGCCCAGATGATCGTGGCCATGAAGGCGGTGTCTCTGGGCTTCGAC
CTGGACCGGGGCGAGGTGGGTGCAGTGCCCTCACCTGTGGAGTTCATGGGCTACCTCTACTTTGTGGGCA
CCATCGTCTTTGGGCCCTGGATATCCTTCCACAGCTACCTACAGGCTGTCCAAGGCCGCCCACTGAGCCG
CCGATGGCTGAAGAAGGTGGCCCGGAGCCTGGCGCTGGCCCTGCTGTGCCTTGTACTGTCCACTTGTGTG
GGCCCCTACCTCTTCCCCTACTTCATCCCCCTCGACGGTGACCGACTCCTTCGCAAGTGGCTACGAGCCT
ACGAGAGTGCTGTCTCCTTCCACTTCAGCAACTATTTTGTGGGCTTTCTGTCTGAGGCCACAGCCACATT
GGCCGGGGCTGGCTTCACGGAGGAGAAGGACCACCTGGAATGGGACCTGACAGTCTCTAGACCGTTGAAT
GTGGAGCTGCCCCGGTCCATGGTGGAAGTTGTCACAAGCTGGAACCTGCCCATGTCTTATTGGTTAAATA
ATTATGTTTTCAAAAATGCCCTTCGCCTGGGGACCTTCTCTGCTGTGCTGGTCACCTATGCAGCCAGTGC
CCTCCTGCATGGCTTCAGTTTCCACCTGGCTGCTGTGCTGCTGTCCCTGGCATTCATCACTTATGTGGAA
CATGTCCTCAGAAAGCGCCTGGCTCAGATCCTCAGTGCCTGCATCTTGTCAAAGCGTTGTCTGCCAGACT
GTTCACATCGGCATCGCTTGGGCCTGGGGGTACGAGCCTTAAACTTGCTCTTTGGGGCCCTGGCTATCTT
CCACCTGTCCTACCTGGGCTCCCTGTTTGATGTCGATGTGGACGACACCACAGAGGAGCAGGGCTACGGC
ATGGCATACACTGTCCACAAGTGGTCAGAGCTCAGCTGGGCCAGTCACTGGGTCACTTTTGGATGCTGGA
TCTTCTACCGTCTCATAGGCTGA

Translation (450 aa):
MATFSRQEFFQQLLQGCLLPTVQQGLDQIWLLLTICFACRLLWRLGLPSYLKHASTVAGGFFSLYHFFQL
HMVWVVLLSLLCYLVLFLCRHSSHRGVFLSVTILIYLLMGEMHMVDTVTWHKMRGAQMIVAMKAVSLGFD
LDRGEVGAVPSPVEFMGYLYFVGTIVFGPWISFHSYLQAVQGRPLSRRWLKKVARSLALALLCLVLSTCV
GPYLFPYFIPLDGDRLLRKWLRAYESAVSFHFSNYFVGFLSEATATLAGAGFTEEKDHLEWDLTVSRPLN
VELPRSMVEVVTSWNLPMSYWLNNYVFKNALRLGTFSAVLVTYAASALLHGFSFHLAAVLLSLAFITYVE
HVLRKRLAQILSACILSKRCLPDCSHRHRLGLGVRALNLLFGALAIFHLSYLGSLFDVDVDDTTEEQGYG
MAYTVHKWSELSWASHWVTFGCWIFYRLIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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