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Report for CCDS30083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30083.1 Public Mus musculus X Rhox9 23 108 98 CCDS HistoryNCBI Gene:104384Re-query CCDS DB by CCDS ID:30083.1Re-query CCDS DB by GeneID:104384See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089062.7 ENSMUSP00000086462.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089062.7Link to Ensembl Protein Viewer:ENSMUSP00000086462.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000089062Re-query CCDS DB by Protein ID:ENSMUSP00000086462
Original member Current member NCBI NM_023894.1 NP_076383.1 Accepted alive Link to Nucleotide Sequence:NM_023894.1Link to Protein Sequence:NP_076383.1Re-query CCDS DB by Nucleotide ID:NM_023894Re-query CCDS DB by Protein ID:NP_076383Link to BLAST:NP_076383.1

Chromosomal Locations for CCDS 30083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37899204 37899299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37900280 37900325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37900952 37901411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37901598 37901679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGAGACTCCTCAAGACAGCCGCCAAAGCATCCAAAAGCCTCCGAGTCCGGGAGCCGAGGAGGACAAGG
AAGAACAGCATGGTGGGAATGCAGTGGTCTCCGGGGCTGGAGAGGAAGGAATAGACAAGAAAGAGCTTGT
TATGAGCGGGCTTGCTCAGGGTGGGCTTGATCAGGGCGAAGGCGCTCAGGGCGAGGTTGCTGGAGGTGAG
CAGGCTCAAGAAGAGCCTGCTCCATTGAGTCCAGCTCAGGAAGCCACTGGAGGAGAAGAGGAGGGAGAAA
ACAAGGAAGGAGAAATGGAAGGAAGACATGCTGGTGATGGTGCTTCTGGCCCCGAGGATGACAACATCCA
GGAAGAAGGCGGCGAAAACATAGATCAACAACCGCCGCAACAAGAGGCAGCCATTCCTGAGGGCATGAGA
AATCCACAGGCTGGGAACTATCTGGCTCACCAGCGGACCCGCCGCACCAGGTTCACCCACTCTCAGCTGC
GTGATCTGGAGCGCCTTTTCCAAGAGAATCGCTTCCCCAGCTTGCGAGTAAGGAGGGATCTTGCACGATG
GATGGGTGTGGATGAATCTGATGTGCAGGAGTGGTTTAAGATGAGGAGAGCCCTTTTCCGCAGACACAGC
AGGCTGATGATGTTCTGCGAACTGCCACCGATTACAGAGAACAACTCTCCCTGA

Translation (227 aa):
METPQDSRQSIQKPPSPGAEEDKEEQHGGNAVVSGAGEEGIDKKELVMSGLAQGGLDQGEGAQGEVAGGE
QAQEEPAPLSPAQEATGGEEEGENKEGEMEGRHAGDGASGPEDDNIQEEGGENIDQQPPQQEAAIPEGMR
NPQAGNYLAHQRTRRTRFTHSQLRDLERLFQENRFPSLRVRRDLARWMGVDESDVQEWFKMRRALFRRHS
RLMMFCELPPITENNSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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