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Report for CCDS30089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30089.1 Public Mus musculus X Tmem255a 23 108 98 CCDS HistoryNCBI Gene:245386Re-query CCDS DB by CCDS ID:30089.1Re-query CCDS DB by GeneID:245386See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066498.7 ENSMUSP00000064511.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066498.7Link to Ensembl Protein Viewer:ENSMUSP00000064511.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000066498Re-query CCDS DB by Protein ID:ENSMUSP00000064511
Original member Current member NCBI NM_172930.4 NP_766518.3 Accepted alive Link to Nucleotide Sequence:NM_172930.4Link to Protein Sequence:NP_766518.3Re-query CCDS DB by Nucleotide ID:NM_172930Re-query CCDS DB by Protein ID:NP_766518Link to BLAST:NP_766518.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766518.3 351 Q8BHW5-1 351 100% 0 0

Chromosomal Locations for CCDS 30089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38199492 38199656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38208010 38208153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38215178 38215340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38224581 38224669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38225054 38225125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38226888 38226956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38233103 38233192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38235841 38235903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38245716 38245858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38252244 38252301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGCATCAGTCCCTGACTCAGCAGCGGTCCAGCGACATGTCCCTTCCCGATTCCATGGGAGCCTTCAATA
GGAGGAAGCGGAACTCCATCTACGTCACCGTTACTTTGCTTATTGTGTCCATGTTAATTCTCACGGTGGG
CCTTGCTGCGACTACCAGGACCCAGAATGTGACCGTGGGAGGTTATTACCCAGGAGTTATTCTTGGCTTT
GGATCATTCCTTGGGATCATCGGGTCAAACCTGATTGAGAACAAGCGGCAGATGCTGGTGGCTTCTATCG
TGTTTATCAGCTTTGGTGTGATTGCAGCATTTTGTTGTGCTATAGTTGATGGGGTCTTTGCCGCCAGACA
CATTGATTTGAAACCACTCTATGCTAACCGGTGCCACTATGTTCCCAAGACATCACAGAGGGAAGCTGAG
GAGGTCATAACTTCCTCATCCAAAATTACTCCTTCTACGAGGGCTTTGAGGAACCTTACCCAGGCAGTTA
AAGAGGTGAACTGCCCTCAACTTAGCCGTGGACTTTGCACACCTCGCATCCGGGGCAACACCTGCTTCTG
CTGTGACCTCTACAACTGTGGCAACAGGGTGGAAATCACCGGCGGCTACTATGAGTACATTGATGTCAGC
AGCTGCCAGGACATCATCCACCTGTACCACCTACTCTGGTCTGCCACCATCCTCAACATCGTTGGCCTGT
TCCTGGGTATCATTACTGCTGCGGTCCTTGGGGGATTTAAGGATATGAACCCTACTCTTCCGGCACTGAA
CTGCTCTGTTGAAAATGCCCATCCAACTGTTTCTTACTATGCGCGTCCCCAAGTGGCATCGTACAATACC
TACTACCATAGCCCTCCTCATCTGCCACCGTATTCTGCTTATGACTTTCAGCATTCCGGTGTCTTTCCAT
CCTCTCCTCCTTCTGGACTCTCCGATGAGCAGGAGCCCCAATCGCCCTCTCCTTCACCCAGCTACATGTG
GTCCTCCAGTGCGCCACCCCGTTATTCTCCACCCTACTACCCACCTTTTGAAAAGCCACCACCTTACAGT
CCTTAA

Translation (351 aa):
MHQSLTQQRSSDMSLPDSMGAFNRRKRNSIYVTVTLLIVSMLILTVGLAATTRTQNVTVGGYYPGVILGF
GSFLGIIGSNLIENKRQMLVASIVFISFGVIAAFCCAIVDGVFAARHIDLKPLYANRCHYVPKTSQREAE
EVITSSSKITPSTRALRNLTQAVKEVNCPQLSRGLCTPRIRGNTCFCCDLYNCGNRVEITGGYYEYIDVS
SCQDIIHLYHLLWSATILNIVGLFLGIITAAVLGGFKDMNPTLPALNCSVENAHPTVSYYARPQVASYNT
YYHSPPHLPPYSAYDFQHSGVFPSSPPSGLSDEQEPQSPSPSPSYMWSSSAPPRYSPPYYPPFEKPPPYS
P


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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