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Report for CCDS30263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30263.1 Public Mus musculus X Dcaf8l 23 108 98 CCDS HistoryNCBI Gene:18630Re-query CCDS DB by CCDS ID:30263.1Re-query CCDS DB by GeneID:18630See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113959.7 ENSMUSP00000109592.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113959.7Link to Ensembl Protein Viewer:ENSMUSP00000109592.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113959Re-query CCDS DB by Protein ID:ENSMUSP00000109592
Original member Current member EBI ENSMUST00000113960.2 ENSMUSP00000109593.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113960.2Link to Ensembl Protein Viewer:ENSMUSP00000109593.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113960Re-query CCDS DB by Protein ID:ENSMUSP00000109593
Original member Current member NCBI NM_008821.2 NP_032847.2 Accepted alive Link to Nucleotide Sequence:NM_008821.2Link to Protein Sequence:NP_032847.2Re-query CCDS DB by Nucleotide ID:NM_008821Re-query CCDS DB by Protein ID:NP_032847Link to BLAST:NP_032847.2

Chromosomal Locations for CCDS 30263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 89404278 89406521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGTCATCTCATGAGAGCTACACAAATGCTGCAGAGACCCCTGAGAATATAAGCATACTCAGCTGCTTGG
GTGAGACTTCTGGTGCCCTGGTGGACACAAAGACAATTTCTGACATTAAAACTATGGATCCAGAAGTGAG
TCTGACACCAAGCAGTGATGTTACTGGCACTGAAGACAGCAGTGTTTTAAGCCCTCAAAGTACTGATGTA
AATTCTGTTGATAGTTACCAGGGTTATGAGGGTGACGATGACGACGAAGAAGATGATGAAGATGACAAAG
ATGGCGATTCCAATCTTCCCAGCTTGGAGGACTCTGACAATTTTATCAGCTGTTTGGAAAACTCATATAT
CCCTCAAAATGTAGAGAAGCGTGAGGTTGTGGAAGAGCAGAGTCTGGGAAGGCGTTTTCATCCATACGAG
TTGGAGGCTGGTGAGGTTGTGGAAGGGCAGGGAGGGGGAAGCCTGTTCTATCCATATGAGCTGGAGGCTG
GAGAAGTTGTGGAAGCACAGAATGTTCAAAACCTGTTCCACCGTTATGAGTTGGAAGAAGGTGAGGTTGT
AGAAGCACAGGTAGTACAAAGCATGTTTCCCTACTATGAGTTGGAGGCAGGAGAAGTTGTGGAAGCTGAG
GAAGTGCAAGGTTTTTTCCAACGTTATGAATTGGAGGCTAGAGAGGTTATAGGAGCACAGGGAGGACAAG
GTCTTTCCCGCCATTATGGATTGGAGGGAGGTGAGGTTGTGGAAGCAACAGCAGTGCGCAGACTGATTCA
GCACCATGAGTTGGAGGAAGGTGAGGATGTAGATGATCAGGAAGAGAGCTCTGAGATGCATGAAGAGACC
AGTGAGGACAGCAGTGAGCAATATGACATTGAAGATGATAGCTTGATAGATGAATGGATAGCTTTAGAGA
CATCTCCTCTCCCAAGACCTCGATGGAATGTCCTTAGTGCTCTTCGTGATAGGCAGCTGGGTTCAAGTGG
TCGCTTTGTGTATGAAGCCTGTGGTGCAAGATTATTTGTGCAGCGTTTCTCACTAGAGCATGTTTTTGAA
GGCCATTCTGGATGTGTCAACACTGTTCATTTTAACCAACATGGCACCCTGCTGGCTAGTGGCAGTGATG
ATCTAAAAGTGATTGTATGGGACTGGCTTAAAAAACGATCAGTACTGAACTTTGACAGTGGCCACAAAAA
TAATATCTTGCAGGCTAAATTCCTTCCCAACTGTAATGATGCCATCTTGGCTATGTGTGGCCGTGATGGG
CAGGTACGAGTTGCACAGCTATCTGCTGTGGCAGGCACCCACATGACTAAGCGTTTGGTGAAGCATGGGG
GAGCATCTCATAGACTGGGTTTGGAACCAGATTCCCCCTTTAGGTTCTTAACTTCAGGTGAAGATGCAGT
TGTCTTCAATATTGACCTCAGACAAGCCCACCCAGCTTCAAAGTTGCTTGTAATCAAAGATGGTGATAAG
AAAGTGGGACTGTATACAGTCTTTGTGAATCCTGCCAATGTCTACCAGTTTGCTGTAGGTGGGCAAGATC
AGTTTATGAGGATTTATGACCAAAGGAAAATTGATGAGAATGTCAACAATGGAGTTCTCAAAAAATTCTG
CCCTCATCACCTTCTTAGCTCTGATTACCCAGCACACATCACATCTCTGATGTACAGCTATGATGGCACA
GAGATCCTGGCTAGCTACAATGATGAAGATATTTATATCTTCAACTCTTCTGATAGTGATGGAGCTCAAT
ATGCTAAGAGATATAAAGGACACAGAAATAATTCTACAGTGAAAGGTGTATATTTCTATGGCCCAAGAAG
TGAATTCGTGATGAGTGGTAGCGATTGTGGGCATATCTTCATCTGGGAAAAATCATCCTGCCAGATCGTT
CAGTTCTTAGAGGCAGATGAAGGAGGAACAATAAACTGTATTGATTCACATCCTTACCTACCTGTGTTGG
CATCCAGTGGGCTAGACCATGAAGTCAAAATCTGGTCACCCATAGCTGAACCTTCCAAGAAGCTTGCCGG
CTTAAAGAATGTGATTAAAATTAATAAGCTGAAACGAGATAATTTTACCTTGCGCCACACTTCCCTGTTT
AACAACAGCATGCTTTGTTTCCTCATGAGTCATGTGACACAGTCAAATTATGGACGCAGTTGGAGAGGTA
TTAGAATTAATGCTGGAGGTGGAGATTTCAGTGACTCTTCCAGCAGCTCTGAGGAAACAAACCAAGAATC
ATAG

Translation (747 aa):
MSSHESYTNAAETPENISILSCLGETSGALVDTKTISDIKTMDPEVSLTPSSDVTGTEDSSVLSPQSTDV
NSVDSYQGYEGDDDDEEDDEDDKDGDSNLPSLEDSDNFISCLENSYIPQNVEKREVVEEQSLGRRFHPYE
LEAGEVVEGQGGGSLFYPYELEAGEVVEAQNVQNLFHRYELEEGEVVEAQVVQSMFPYYELEAGEVVEAE
EVQGFFQRYELEAREVIGAQGGQGLSRHYGLEGGEVVEATAVRRLIQHHELEEGEDVDDQEESSEMHEET
SEDSSEQYDIEDDSLIDEWIALETSPLPRPRWNVLSALRDRQLGSSGRFVYEACGARLFVQRFSLEHVFE
GHSGCVNTVHFNQHGTLLASGSDDLKVIVWDWLKKRSVLNFDSGHKNNILQAKFLPNCNDAILAMCGRDG
QVRVAQLSAVAGTHMTKRLVKHGGASHRLGLEPDSPFRFLTSGEDAVVFNIDLRQAHPASKLLVIKDGDK
KVGLYTVFVNPANVYQFAVGGQDQFMRIYDQRKIDENVNNGVLKKFCPHHLLSSDYPAHITSLMYSYDGT
EILASYNDEDIYIFNSSDSDGAQYAKRYKGHRNNSTVKGVYFYGPRSEFVMSGSDCGHIFIWEKSSCQIV
QFLEADEGGTINCIDSHPYLPVLASSGLDHEVKIWSPIAEPSKKLAGLKNVIKINKLKRDNFTLRHTSLF
NNSMLCFLMSHVTQSNYGRSWRGIRINAGGGDFSDSSSSSEETNQES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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