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Report for CCDS30296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30296.1 Public Mus musculus X Yipf6 23 108 98 CCDS HistoryNCBI Gene:77929Re-query CCDS DB by CCDS ID:30296.1Re-query CCDS DB by GeneID:77929See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054697.6 ENSMUSP00000056039.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054697.6Link to Ensembl Protein Viewer:ENSMUSP00000056039.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054697Re-query CCDS DB by Protein ID:ENSMUSP00000056039
Original member Current member EBI ENSMUST00000113811.7 ENSMUSP00000109442.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113811.7Link to Ensembl Protein Viewer:ENSMUSP00000109442.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113811Re-query CCDS DB by Protein ID:ENSMUSP00000109442
Original member Current member NCBI NM_207633.2 NP_997516.1 Accepted alive Link to Nucleotide Sequence:NM_207633.2Link to Protein Sequence:NP_997516.1Re-query CCDS DB by Nucleotide ID:NM_207633Re-query CCDS DB by Protein ID:NP_997516Link to BLAST:NP_997516.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997516.1 236 Q8BR70 236 100% 0 0

Chromosomal Locations for CCDS 30296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 98938232 98938288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98939773 98939901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98940122 98940200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98940787 98940829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98942778 98942906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98943478 98943635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98944873 98944988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCGGAAGCGGAGGACTCTCCGGGAGAACAGGAGGCAGCGGCATCCAAGCCCCTGTTTGCAGGGTTGT
CTGATGTGTCAATTTCTCAGGACATTCCCATAGAAGGGGAGATTACCATCCCCTCCAGAGCTCGTGCTCA
AGAACATGACAGCTCCACACTGAATGAATCCATTCGTCGGACCATTATGCGAGATCTAAAAGCTGTGGGA
AGGAAATTTATGCATGTTTTATATCCAAGGAAGAGTAATGCACTGTTAAGAGACTGGGACCTGTGGGGCC
CATTGATACTTTGTGTGACACTTGCATTGATGTTACAGAAAAGTTCCATTGATGGGAAGAATGATGGCGG
AGGCCCAGAATTCGCAGAAGTATTTGTTATCATCTGGTTTGGAGCAGTTACCATCACGCTGAATTCCAAA
CTTCTTGGCGGAAACATTTCTTTTTTTCAGAGTCTCTGTGTATTAGGGTACTGCATTCTTCCTTTGAACA
TCGCAATGCTGATCTGCCGCTTGCTGCTTTTGGCTGGACAGGGACCAATAAACTTCATGATTCGGCTTTT
TGTAGTGTTGTTGATGTTCGCTTGGTCCGTGGTGGCATCTACAGCATTCCTTGCTGACAGCCAGCCTCCA
AACAGAAAAGCCCTGGCAGTGTATCCTGTCTTTTTATTCTACTTTGTCATCAGTTGGATGATACTCACGT
TCACGCCATGA

Translation (236 aa):
MAEAEDSPGEQEAAASKPLFAGLSDVSISQDIPIEGEITIPSRARAQEHDSSTLNESIRRTIMRDLKAVG
RKFMHVLYPRKSNALLRDWDLWGPLILCVTLALMLQKSSIDGKNDGGGPEFAEVFVIIWFGAVTITLNSK
LLGGNISFFQSLCVLGYCILPLNIAMLICRLLLLAGQGPINFMIRLFVVLLMFAWSVVASTAFLADSQPP
NRKALAVYPVFLFYFVISWMILTFTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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