NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30359.1 Public Mus musculus X Apool 23 108 98 CCDS HistoryNCBI Gene:68117Re-query CCDS DB by CCDS ID:30359.1Re-query CCDS DB by GeneID:68117See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026599.9 ENSMUSP00000026599.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026599.9Link to Ensembl Protein Viewer:ENSMUSP00000026599.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026599Re-query CCDS DB by Protein ID:ENSMUSP00000026599
Original member Current member NCBI NM_026565.3 NP_080841.1 Accepted alive Link to Nucleotide Sequence:NM_026565.3Link to Protein Sequence:NP_080841.1Re-query CCDS DB by Nucleotide ID:NM_026565Re-query CCDS DB by Protein ID:NP_080841Link to BLAST:NP_080841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080841.1 265 Q78IK4 265 100% 0 0

Chromosomal Locations for CCDS 30359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112311422 112311436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112333801 112333905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112346238 112346357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112349801 112349855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112351300 112351398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112354161 112354252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112364157 112364270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112364462 112364570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112372194 112372282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGGCGGCCTTTAGGATGGGAAAGTTGACAACCATACCTGCAGGTCTGATATATGCATCTATAAATGTGC
GTCTTGCCAAAGAAGAGGAACCCAAAAAGCAGCTAGTGAGACCGGATCAGCTCCCCATATATACTGCACC
ACCCCTCCATTCTAAATATGTTGAAGAACAGCCTGGTAATTTACAAAGGGGCTTTGCATCCATCCGTACT
ACAACCGTGTATTATATTGGCTGGTGCAAGAGCATTTATCTCTTTATGAAGAATGGGGTTATGGATACAG
TACAGTTTGGAAAAGATGCATATGTCTATCTGAAGAATCCTCCGCAAGATTTTCTCCCCAAAATGGGAGT
GATTACAGCTTCGGGACTGGCAGGTTTGCTTTCAGCAAGAAAAGGTTCCAGGTTTAAGAAGATTGCTTAT
CCACTAGGACTGGCCACATTAGGAGCGACTGTTTGCTACCCAGCTCAGTCAGTAATAATTGCAAAGATAA
CTGGGAAAAAGGCATATGCTACAAGCCAGCAAATTTTTCAAGCCATTAAGTCATTGTGGACACAAAAAAG
TGAAAACGAATCACTCCCTGAACCAAAGGAAGAAAGCAAGGAAGGAAGGTCTGATGAAATCCATGCCAGC
TTGCCTGACCTGAAACATTCAGTGTCTTTGCCAAAAGAACTTGCCTCTGCAACAGTGATTAAATCAGAAT
CTACCTCAGGTACTACACAGTTCATTCCTGACCCCAAGCTCATGGATCATGGGCAGTCTCATCCAGATGA
TAAAGATATGTACAGCACTAGAAGCTGA

Translation (265 aa):
MAAFRMGKLTTIPAGLIYASINVRLAKEEEPKKQLVRPDQLPIYTAPPLHSKYVEEQPGNLQRGFASIRT
TTVYYIGWCKSIYLFMKNGVMDTVQFGKDAYVYLKNPPQDFLPKMGVITASGLAGLLSARKGSRFKKIAY
PLGLATLGATVCYPAQSVIIAKITGKKAYATSQQIFQAIKSLWTQKSENESLPEPKEESKEGRSDEIHAS
LPDLKHSVSLPKELASATVIKSESTSGTTQFIPDPKLMDHGQSHPDDKDMYSTRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH