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Report for CCDS30445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30445.1 Public Mus musculus X Irs4 23 108 98 CCDS HistoryNCBI Gene:16370Re-query CCDS DB by CCDS ID:30445.1Re-query CCDS DB by GeneID:16370See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067841.7 ENSMUSP00000067085.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067841.7Link to Ensembl Protein Viewer:ENSMUSP00000067085.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067841Re-query CCDS DB by Protein ID:ENSMUSP00000067085
Original member Current member NCBI NM_010572.2 NP_034702.2 Accepted alive Link to Nucleotide Sequence:NM_010572.2Link to Protein Sequence:NP_034702.2Re-query CCDS DB by Nucleotide ID:NM_010572Re-query CCDS DB by Protein ID:NP_034702Link to BLAST:NP_034702.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034702.2 1216 Q9Z0Y7 1216 100% 0 0

Chromosomal Locations for CCDS 30445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 141721548 141725198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3651 nt):
ATGGCGAGTTGCTCCTTCTCTGGCCACCAAGCGCTTAGGAGACTGAGAGCCTCAGCAGCAGCAGCAGCCT
CCGCAGCTCTAGCAGCAGTGGCGACCACCCCGCTCCTTTCCTCGGGAACCCGGACCGCACTCATTGGGAC
CGGGTCGTCCTGTCCGGGAGCCATGTGGCTCTCCACAGCCACTGGCTCCCGGTCAGACTCGGAATCCGAA
GAGGAGGACCTCCCCGTCGGGGATGAAGTCTGCAAACGCGGCTACCTGAGGAAGCAGAAGCATGGGCATA
GGCGTTACTTCGTGCTCAAACTCGAGACCGCAGACGCTCCAGCTCGACTCGAATACTACCGAAATGCCAG
GAAGTTCCGGCACAGTGTCCGCGCCGCGGCGGCTGCAGCAGAGGCGGCCGCCTCCGGTGCTGCGGTCCCC
GCGCTCATCCCACCACGGCGCGTGATCATCCTGTACCAATGCTTCTCCGTGAGCCAGCGCGCCGATGCCA
GGTACCGACACCTCATTGCCCTTTTTACCCAGGACGAATACTTCGCGATGGTGGCCGAGAACGAGTCGGA
ACAAGAAAGCTGGTACTTGCTCCTCAGCCGCCTCATCCTCGAGAGCAAGCGCCGCCGCTGCGGCACGCTA
GGCGCACTGCCGGACGGAGAGCCGGCAGCCCTGGCGGCCGCAGCGGCGGCGGAGCCACCCTTCTACAAAG
ATGTGTGGCAGGTAGTAGTGAAACCCAGGGGGCTGGGGCACAGAAAAGAGCTGAGCGGCGTGTTCCGGCT
GTGTCTTACCGACGAAGAGGTAGTGTTTGTAAGGCTCAATACCGAAGTGGCCAGTGTGGTCGTCCAGCTG
CTGAGCATTCGTCGCTGTGGGCACTCGGAGCAGTACTTCTTCTTGGAAGTCGGCAGATCCACTGTCATAG
GTCCGGGGGAGCTGTGGATGCAAGTGGATGACTCCGTGGTGGCCCAAAATATGCATGAGCTGTTTCTGGA
GAAGATGAGAGCCTTGTGCGCAGATGAATACAGAGCCCGATGCCGCAGCTACAGCATCAGTATTGGCGCC
CACCTGTTAACCCTGCTGTCCACTAGGAGGCACCTGGGCTTGCTCCCGCTGGAGCCTGGTGGCTGGCTCA
GAAGATACGGCTTGGAGCAGTTTTGCCGCCTCAGAGCTATCCGTGAGAGGGAAGAGATGCTATTCACCAG
GCGCTTCATCTCACCCAGAGAGCCTCCGCCTCCCTTTAGGCGAGGAAGAGGGCACCTGCCCAGAGCCCGC
AGGTCCAGGAGAGCCGCGTCAGTACCACCCAGCCTTTTCCGACGCTCAGCACCTAGCCCGGGAAGGATCC
CACAGCCTGAAGATGTCCCCAACGACAGAGCCCGTGAAGCCTCCGGTTCCAGCTCTGGCAACACTGAAGA
AAAAGACAAGGAGGGTGAGGAAGGAAACCGAGGTGATTGCATACCTATGAACAACTGGGGCTCAGGAAAT
GGCCGGGGCTCAGGAGGTGGACGGGGCTCAAGTGGCCAAGGTTCCAGTAGCCAGGGCTCAGGTGGGAGAC
AGGGATCTGGAGGTGGCCAGGGCTCAGGAGGCCAGGGTGCCGGAGGAAACCAGTGTTCAGGAAATGGCCA
GGGCACAGCAGGTGGCCATGGCTCAGGTGGAGGTGGCCATGGCTCAGGCGGTGGCCAGAGACCTGGAGAT
GGTCATGGCTCAGGTGGTGGCAAGAACTCAGGAAGTGGGAAAAATTCTGACGATGGTGACCGTGGAAAAT
CTGTGAAGAAAAGATCCTACTTTGGTAAATTCACTCAAAGCAAGCAGCAGCAAACACTGCCTCCACCCCC
ACCGCCACCGCCAGCAGCTGGAGCAACTGGTGGCAAAGGGAAGTCTGGAGGAAGATTCCGACTTTATTTT
TGCGCAGACAGAGGCACAAAAGAACGCAAAGAAGCCAAAGAGGTAAGAGATATGGAGACCTCAGGAGGTG
CTACCCGGGGGCCTTACAGAGCCAGAGCTTTCGATGAAGATGAGGATGACCCGTATGTGCCAATGAGACC
AGGGGTGGCTGCCCCTCTTGCGTGTTCCAGTGATTATATGCCAATGGCTCCTCAAAATTCCTCTGCTTCA
ACAAAACGCCACTCTAGGTCACCCTTTGAAGACTCCAGAGGGTACATGATGATGTTTCCCAGAGTGAGCC
CCCCACCACCTGTGCCAAGTGCTCCGAAAGCACCGGACACCAATAAAGGGGATGACTCAAAGGACAATGA
CAGTGACAGTGATTACATGTTTATGGCTCCCGGAGCAGGTGCGATTCCTAAAAATCCTCCCAATGCGCAG
GGAGGCTCTTCCTCCAAAAGCTGGAGCTCGTATTTCTCTCTGCCAAGTCCTTTTCAGAGTTCACCTTTGG
GACAGAGTGACCACAGTGAGTATGTTCCTATGTTACCTGGAAAATTCCTGGGGAGCGGTCTACACAAAGA
AGCCTCCTTTAGCCAGGGCACCAAAAATGTGTCTTCAAAGCCTTCAACTGAGGCGTCATTCTCAAAACCC
GAAGATAAAGGGTCATCTGCAAAGCCTTCAGATGATGTGCCCCCAATGAACAAGGCTAAGGAACCTAACC
ACCTTTCTTTTATTGCAAAAGGAACTCAAGTAAAGCCCAAACCGCTAAACCCCACACAGGAGCGGAGAGA
AGCTGCTGGCTCCCGTGACTATATCAACATTGACTTTATTAAGAGAGAGCGCCTTGTGCTACCTTCCTCT
GCTCAAGGACTGCCAGACATGCGGGGCGTAGTTACTGACCCCGCACCCACAGCTTTTTCTGGCTACCTGA
ATGTTGAATTCGGGGTGCCCTTCCCAAATCCAACAATCCGCCTCTCAGATCTTTTAAGAGTTCTACCAGG
TGCCAACTCCATCCCTCTGGCCGGTACTAGGTGGCCCTTCCCAGGCAGTGCTATAGGTAGCATTGTGGAA
GCGGGAGAATACATTGAAGTTATTTTCAACCCGGCTATGACACCAGCCATGTCTTTTGCTGACAGTGCCA
TTTGCTATGATGCTCAAACAGGTCAAATCTATGTCGTCGACCCATTTTCTGAGTGCTGTATGGACGTTTC
TCTCTCTCCTGGTCGATGCTCTGAACCGCCACCTGTAGCTAGGCTGCGGCGGGAGGAAGCGCAGGAGAGA
AGACGCCCACAAAGCCGCTCCCAAAGTTTATTTGCCAGCACTCGAGCCGCGGTCTCGGCTTTCCCGACTG
ACAGCTTGGACAGAGACTTTCCCGCCGCTTCTGCGGTGATTGCTGCTCCAGCTGAGGCGCCTCTCTTGGC
AGTGAGCCGGGCTTTAGCCGTGGTCTCTGCGCTCGCAGCGGCCCCCAGCATAGGCGACGTCTTTGCAGGC
TTCCGCGCTGCGGCAGGAGTTGACTCCGCCTCCGCTCGCGGGTTCCAACCTGTTGCGGGTGCCCAGGCTG
TAAGAGAATTCCAGGACCTTGCCGCAGGCTGGAATCCTGGAGCCCTTAACCACAGGGCCCGAGGTGAGGA
CCTGGCCGCCGGCGCAGCGGCTCCCCCGCCGCCACCTCGCCAGATTTGGGTGCTGAGACCCCAAGAGAGA
GCGGATTCTGAGGACGACGACGATGATGACGACGACATTTACGTGAGAATGGACTTTGCCAGACGAGACT
ACAGGAAGTGA

Translation (1216 aa):
MASCSFSGHQALRRLRASAAAAASAALAAVATTPLLSSGTRTALIGTGSSCPGAMWLSTATGSRSDSESE
EEDLPVGDEVCKRGYLRKQKHGHRRYFVLKLETADAPARLEYYRNARKFRHSVRAAAAAAEAAASGAAVP
ALIPPRRVIILYQCFSVSQRADARYRHLIALFTQDEYFAMVAENESEQESWYLLLSRLILESKRRRCGTL
GALPDGEPAALAAAAAAEPPFYKDVWQVVVKPRGLGHRKELSGVFRLCLTDEEVVFVRLNTEVASVVVQL
LSIRRCGHSEQYFFLEVGRSTVIGPGELWMQVDDSVVAQNMHELFLEKMRALCADEYRARCRSYSISIGA
HLLTLLSTRRHLGLLPLEPGGWLRRYGLEQFCRLRAIREREEMLFTRRFISPREPPPPFRRGRGHLPRAR
RSRRAASVPPSLFRRSAPSPGRIPQPEDVPNDRAREASGSSSGNTEEKDKEGEEGNRGDCIPMNNWGSGN
GRGSGGGRGSSGQGSSSQGSGGRQGSGGGQGSGGQGAGGNQCSGNGQGTAGGHGSGGGGHGSGGGQRPGD
GHGSGGGKNSGSGKNSDDGDRGKSVKKRSYFGKFTQSKQQQTLPPPPPPPPAAGATGGKGKSGGRFRLYF
CADRGTKERKEAKEVRDMETSGGATRGPYRARAFDEDEDDPYVPMRPGVAAPLACSSDYMPMAPQNSSAS
TKRHSRSPFEDSRGYMMMFPRVSPPPPVPSAPKAPDTNKGDDSKDNDSDSDYMFMAPGAGAIPKNPPNAQ
GGSSSKSWSSYFSLPSPFQSSPLGQSDHSEYVPMLPGKFLGSGLHKEASFSQGTKNVSSKPSTEASFSKP
EDKGSSAKPSDDVPPMNKAKEPNHLSFIAKGTQVKPKPLNPTQERREAAGSRDYINIDFIKRERLVLPSS
AQGLPDMRGVVTDPAPTAFSGYLNVEFGVPFPNPTIRLSDLLRVLPGANSIPLAGTRWPFPGSAIGSIVE
AGEYIEVIFNPAMTPAMSFADSAICYDAQTGQIYVVDPFSECCMDVSLSPGRCSEPPPVARLRREEAQER
RRPQSRSQSLFASTRAAVSAFPTDSLDRDFPAASAVIAAPAEAPLLAVSRALAVVSALAAAPSIGDVFAG
FRAAAGVDSASARGFQPVAGAQAVREFQDLAAGWNPGALNHRARGEDLAAGAAAPPPPPRQIWVLRPQER
ADSEDDDDDDDDIYVRMDFARRDYRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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