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Report for CCDS30478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30478.1 Public Mus musculus X Mageh1 23 108 98 CCDS HistoryNCBI Gene:75625Re-query CCDS DB by CCDS ID:30478.1Re-query CCDS DB by GeneID:75625See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051484.4 ENSMUSP00000057157.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051484.4Link to Ensembl Protein Viewer:ENSMUSP00000057157.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000051484Re-query CCDS DB by Protein ID:ENSMUSP00000057157
Original member Current member NCBI NM_023788.3 NP_076277.1 Accepted alive Link to Nucleotide Sequence:NM_023788.3Link to Protein Sequence:NP_076277.1Re-query CCDS DB by Nucleotide ID:NM_023788Re-query CCDS DB by Protein ID:NP_076277Link to BLAST:NP_076277.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076277.1 218 Q9NWG9 218 100% 0 0

Chromosomal Locations for CCDS 30478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153036682 153037338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGCCTCGGGGACGGAAGAGTCGGCGCCGCCGGAACGCAAAGGCAGCTGAAGAGAATCGCAACAATCGCA
AGAGCCAGGCCTCAGAGGCTTCAGAGACCCCGATGGCGGCTTCTGTAGCCCCGAGCACACCCGAAGAATA
CCTGAGCGGCCCGGAGGAAGACACAAGCACCCTGGAGAAGGCCTCCAGTACCCCTTCAGAAGCTTCGAGC
ACTGCCCTAGTGCAAAAGCCGGTTACCCGGAGCAATTTTCAGGGCACCAAGAAAAGTCTCCTAATGTCCA
TATTAGCCCTCATCTTCATCATGGGCAACAGCGCAAAGGAGGCCCTGGTGTGGAAAGTGCTGGGGAAGTT
AGGGATGCAGCCTGGGAGGCAGCACAGCATCTTTGGAGATCCGAAGAAGGTCGTTACAGAAGAGTTTGTG
CGCAGAGGGTATCTGATTTATAAGCCAGTGCCCCGCAGCAGTCCAGTGGAGTATGAGTTCTTCTGGGGCC
CTCGAGCACACGTGGAATCTAGCAAGCTGAAAGTCATGCATTTTGTGGCAAGAGTTCGGAACCGATGCTC
CAAAGACTGGCCATGTAACTATGACTGGGATTCAGATGATGATGCAGAGGTTGAGGCTATTCTCAATTCG
GGTGCTAGGGGTTATTCTGCTCCATAG

Translation (218 aa):
MPRGRKSRRRRNAKAAEENRNNRKSQASEASETPMAASVAPSTPEEYLSGPEEDTSTLEKASSTPSEASS
TALVQKPVTRSNFQGTKKSLLMSILALIFIMGNSAKEALVWKVLGKLGMQPGRQHSIFGDPKKVVTEEFV
RRGYLIYKPVPRSSPVEYEFFWGPRAHVESSKLKVMHFVARVRNRCSKDWPCNYDWDSDDDAEVEAILNS
GARGYSAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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