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Report for CCDS30534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30534.1 Public Mus musculus X Arhgap6 23 108 98 CCDS HistoryNCBI Gene:11856Re-query CCDS DB by CCDS ID:30534.1Re-query CCDS DB by GeneID:11856See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033721.12 ENSMUSP00000033721.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033721.12Link to Ensembl Protein Viewer:ENSMUSP00000033721.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033721Re-query CCDS DB by Protein ID:ENSMUSP00000033721
Original member Current member NCBI NM_009707.4 NP_033837.2 Accepted alive Link to Nucleotide Sequence:NM_009707.4Link to Protein Sequence:NP_033837.2Re-query CCDS DB by Nucleotide ID:NM_009707Re-query CCDS DB by Protein ID:NP_033837Link to BLAST:NP_033837.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033837.2 987 O54834-1 987 100% 0 0

Chromosomal Locations for CCDS 30534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 168796221 168796811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169220198 169220357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169237490 169237561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169246522 169246781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169248516 169248711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169253578 169253633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169256486 169256636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169257652 169257800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169265423 169265602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169281961 169282058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169300063 169300337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169301756 169301836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169302317 169303011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2964 nt):
ATGTCCGCGCAGAGCCTGCTGCACAGTGTCTTCTCCTGCTCCTCGCCCGCGTCGGGCGGCACGGCCTCGG
CCAAGGGATTCTCCAAAAGGAAGCTGCGCCAGACGCGCAGCCTGGACCCAGCTCTGATCGGTGGCTGCGG
GAGCGAGATGGGCGCCGAGGGCGGCCTGCGGGGCTCCACAGTAAGCCGCCTCCATTCTCCACAGCTCTTA
GCAGAGGGTCTCGGTTCCCGCTTAGCTTCTTCTCCCCGGAGTCAGCACCTTCGGGCTACCCGGTTCCAGA
CTCCGAGACCTCTGTGCTCGTCTTTTTCCACACCAAGTACCCCGCAAGAAAAGTCGCCTTCTGGCAGCTT
CCACTTTGACTACGAGGTCCCACTGAGTCGCAGTGGTCTCAAGAAGAGCATGGCCTGGGACTTGCCTTCT
GTCCTGGCCGGGTCCGGGTCCGCTAGTAGCCGCAGTCCCGCAAGCATCCTCAGTTCCTCCGGGGGAGGCC
CCAATGGCATCTTCTCTTCTCCTAGGAGATGGCTCCAGCAGAGGAAGTTCCAGCCTCCACCTAACAGTCG
CAGTCACCCTTACGTCGTGTGGAGGTCCGAGGGTGACTTCACCTGGAACAGCATGTCTGGTCGTAGCGTG
CGCCTGAGGTCAGTCCCCATCCAGAGCCTCTCAGAGCTGGAGCGGGCACGACTGCAGGAAGTGGCTTTTT
ATCAGTTGCAGCAGGACTGTGACCTGGGCTGTCAGATCACCATCCCCAAAGATGGACAAAAGAGAAAGAA
ATCTTTGAGAAAGAAACTGGATTCACTAGGGAAGGAAAAGAACAAAGACAAAGAATTCATCCCACAGGCA
TTTGGAATGCCCTTATCCCAAGTCATTGCTAATGACCGGGCATATAAACTGAAGCAAGACTTGCAGAGGG
AGGAGCAGAAGGATGCATCATCGGATTTTGTGTCTTCCCTCCTCCCATTTGGGAATAAAAAACAAAACAA
AGAACTCTCAAGCAGTAACTCATCTCTCAGCTCAACCTCAGAAACACCAAATGAGTCTACATCACCGAAT
ACTCCAGAACCAGCTCCTCGGGCCAGGAGAAGGGGCGCCATGTCCGTGGATTCCATCACTGATCTGGATG
ACAACCAGTCTCGACTCCTAGAAGCTTTACAACTCTCCTTGCCTGCTGAGGCTCAGAGTAAAAAAGAAAA
GGCCAGAGATAAGAAGCTGAGTCTGAATCCTATTTACAGGCAGGTCCCCAGGCTGGTGGACAGCTGCTGT
CAACATCTGGAAAAACATGGCCTCCAGACAGTGGGGATATTCCGAGTTGGAAGCTCAAAGAAGAGAGTAA
GACAATTGCGTGAAGAATTTGACCGTGGGGTTGATGTCTGTCTGGAAGAGGAGCATAGTGTTCACGATGT
GGCAGCCTTGTTAAAGGAGTTCCTTAGAGACATGCCTGACCCCCTTCTCACAAGGGAGCTATACACTGCA
TTTATCAACACTCTCCTGTTGGAGCCTGAGGAACAACTGGGCACCTTGCAACTCCTCATTTACCTTCTAC
CTCCCTGCAACTGCGACACCCTCCACCGCCTCCTACAGTTCCTCTCCATTGTGGCCAGGCATGCTGATGA
TAATGTCAGCAAAGATGGACAAGAGGTTACTGGGAACAAAATGACATCTCTGAACTTAGCCACTATATTT
GGACCCAACCTGCTCCACAAGCAGAAGTCATCAGACAAAGAATATTCTGTTCAGAGCTCAGCCAGAGCTG
AGGAGAGCACAGCCATCATAGCTGTGGTACAGAAGATGATTGAAAATTATGAAGCCTTGTTCATGGTTCC
CCCAGATCTCCAGAATGAAGTGCTGATCAGCCTTCTAGAGACAGATCCAGATGTTGTGGACTACTTGCTC
AGAAGAAAGGCTTCCCAATCCTCGAGCCCTGACATACTTCAGACGGAAGTTTCCTTTTCCATGGGAGGGA
GGCATTCATCTACAGATTCCAACAAAGCCTCCAGTGGAGACATCTCCCCTTATGACAACAACTCCCCAGT
ATTGTCTGAGCGCTCCCTGCTGGCTATGCAAGAGGACAGGGCCCGGGGGGGCTCGGAGAAGCTTTATAAA
GTGCCAGAGCAGTATACACTGGTGGGCCACTTGTCATCGCCAAAGTCAAAGTCAAGAGAAAGTTCTCCTG
GACCAAGGCTTGGAAAAGAAATGTCAGAGGAGCCTTTCAATATCTGGGGAACTTGGCATTCAACATTAAA
AAGTGGATCCAAAGACCCAGGAATGACAGGCTCTTATGGCGACATTTTTGAAAGCAGCTCCCTCCGACCG
AGGCCTTGTTCTCTTTCTCAAGGGAACCTTTCCCTGAACTGGCCTCGGTGTCAAGGGAGCCCGACAGGGC
TGGACAGTGGCACTCAGGTAATTCGGAGGACTCAGACGGCGGCCACCGTGGAGCAGTGCAGTGTCCACCT
TCCGGTGTCACGTGTCTGCAGCACTCCCCACATCCAGGACGGCAGCAGGGGGACCAGGCGGCCTGCAGCC
AGCTCTGATCCATTTTTGTCCCTAAACAGCACAGAAGATCTAGCTGAGGGCAAGGAGGATGTTGCCTGGC
TGCAAAGCCAGGCCCGACCTGTGTACCAGAGACCTCAGGAGAGTGGAAAAGATGACAGGCGCCCCCCTCC
TCCTTACCCGGGGTCAGGGAAGCCTGCCACAACCTCTGCCCAGCTGCCACTAGAGCCTCCCCTGTGGAGG
CTCCAGAGGCATGAAGAAGGTTCAGAAACAGCTGTGGAAGGAGGCCAGCAGGCCTCAGGGGAGCATCAGA
CCAGGCCAAAAAAACTGAGCAGCGCCTACTCCCTCTCAGCCAGCGAGCAGGACAAACAGAACTTAGGGGA
AGCCAGCTGGCTCGACTGGCAGCGAGAGCGGTGGCAGATCTGGGAGCTTCTATCAACTGATAACCCCGAC
GCCCTCCCGGAAACCCTAGTATAA

Translation (987 aa):
MSAQSLLHSVFSCSSPASGGTASAKGFSKRKLRQTRSLDPALIGGCGSEMGAEGGLRGSTVSRLHSPQLL
AEGLGSRLASSPRSQHLRATRFQTPRPLCSSFSTPSTPQEKSPSGSFHFDYEVPLSRSGLKKSMAWDLPS
VLAGSGSASSRSPASILSSSGGGPNGIFSSPRRWLQQRKFQPPPNSRSHPYVVWRSEGDFTWNSMSGRSV
RLRSVPIQSLSELERARLQEVAFYQLQQDCDLGCQITIPKDGQKRKKSLRKKLDSLGKEKNKDKEFIPQA
FGMPLSQVIANDRAYKLKQDLQREEQKDASSDFVSSLLPFGNKKQNKELSSSNSSLSSTSETPNESTSPN
TPEPAPRARRRGAMSVDSITDLDDNQSRLLEALQLSLPAEAQSKKEKARDKKLSLNPIYRQVPRLVDSCC
QHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGVDVCLEEEHSVHDVAALLKEFLRDMPDPLLTRELYTA
FINTLLLEPEEQLGTLQLLIYLLPPCNCDTLHRLLQFLSIVARHADDNVSKDGQEVTGNKMTSLNLATIF
GPNLLHKQKSSDKEYSVQSSARAEESTAIIAVVQKMIENYEALFMVPPDLQNEVLISLLETDPDVVDYLL
RRKASQSSSPDILQTEVSFSMGGRHSSTDSNKASSGDISPYDNNSPVLSERSLLAMQEDRARGGSEKLYK
VPEQYTLVGHLSSPKSKSRESSPGPRLGKEMSEEPFNIWGTWHSTLKSGSKDPGMTGSYGDIFESSSLRP
RPCSLSQGNLSLNWPRCQGSPTGLDSGTQVIRRTQTAATVEQCSVHLPVSRVCSTPHIQDGSRGTRRPAA
SSDPFLSLNSTEDLAEGKEDVAWLQSQARPVYQRPQESGKDDRRPPPPYPGSGKPATTSAQLPLEPPLWR
LQRHEEGSETAVEGGQQASGEHQTRPKKLSSAYSLSASEQDKQNLGEASWLDWQRERWQIWELLSTDNPD
ALPETLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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